Query= MSMg01no194_m02.b1 MSMg01no194_m02.b1 CHROMAT_FILE:
MSMg01no194_m02.b1 PHD_FILE: MSMg01no194_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:43 2005
(562 letters)
>mm_chr11_103870049_103871010
Length = 962
Score = 861 bits (445), Expect = 0.0
Identities = 468/483 (96%), Gaps = 12/483 (2%)
Strand = Plus / Minus
Query: 80 cctagctggctctgacccttcagggcatttcaaatgggttgagccagatattgcagcaca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 cctagctggctctgacccttcagggcatttcaaatgggttgagccagatattgcagcaca 903
Query: 140 tgccgataattccagcacagggagatagagatgagaagactaggagttcaaggccagcct 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 tgccgataattccagcacagggagatagagatgagaagactaggagttcaaggccagcct 843
Query: 200 catacacatagtgagttcaaggacagcttgggctatatgagatcttgttatcaaacaaac 259
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 catacacatagtgagttcaaggacagcttgggctatatgagatcttgttat--------- 792
Query: 260 aaacaaacaaacaaacaaacaaacaaacaaacttggccaagcaaccaaccaaacaagctg 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ---caaacaaacaaacaaacaaacaaacaaacttggccaagcaaccaaccaaacaagctg 735
Query: 320 ggtcatagcttacgaccagtagggaaagatgcttgagtgataagtaaggaggcgaggggt 379
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 734 ggtcatagcttacgaccagtagggaaagatgcttgagtgataagtaaggaggggaggggt 675
Query: 380 taactggaaatgaagacagcagcagatgggcttatggtatagactatttgaactcacctc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 taactggaaatgaagacagcagcagatgggcttatggtatagactatttgaactcacctc 615
Query: 440 catttccacaatccaatggttcattcgttaagttatcccataaaccctctgtgggcctca 499
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 catttccacaatccaatggttcattcgttaagttatcccataaaccctgtgtgggcctca 555
Query: 500 atatctaataagttccatttgtagtaatgattattattgtgattgacagctctgatttat 559
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atacctaataagttccatttgtagtaatgattattattgtgattgacagctctgatttat 495
Query: 560 gag 562
|||
Sbjct: 494 gag 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_m02.g1 MSMg01no194_m02.g1 CHROMAT_FILE:
MSMg01no194_m02.g1 PHD_FILE: MSMg01no194_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:44 2005
(627 letters)
>mm_chr11_103754160_103755186
Length = 1027
Score = 1077 bits (557), Expect = 0.0
Identities = 612/635 (96%), Gaps = 8/635 (1%)
Strand = Plus / Plus
Query: 1 ttgatgacaaagatcacgcggcttctgtagcaggtcctgccttgctgtcacctggcatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttgatgacaaagatcacgcggcttctgtagcaggtcctgccttgctgtcacctggcatcc 252
Query: 61 tgtgctttcaggtttcagcagtcgcgggttggcccttctgcttcagctgaaatacactgc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgtgctttcaggtttcagcagtctcgggttggcccttctgcttcagctgaaatacactgc 312
Query: 121 tctgcagacgatgtatggcttcttcccttcacaaggagcctctagtctagtttatgttct 180
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 313 tctgcagacgatgtatggcttcttcccttcgcagggagcctctagtctagtttatgttct 372
Query: 181 tctgttcctcagaaatcacagccgagctgggcgtggcggtgcacgtctgtaaccctagca 240
|||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 373 tctgctcctcagaaatcacagacgagccgggcgtggtggtgcacgtctgtaaccctagca 432
Query: 241 ttcaggggactgaagactgcagtgagttcaaggccaacctgggcttaacaagtgtattta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctcaggggactgaagactgcagtgagttcaaggccaacctgggcttaacaagtgtattta 492
Query: 301 aggacagcctaggctaccc--------aaaaaataaataaaaaataaaccactcccttaa 352
||| ||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 493 aggccagcctaggctaccccccccacaaaaaaataaataaaaaataaatcactcccttaa 552
Query: 353 ttaagactatctcttcaataattacagtagcaactctcaaaacaatgtatcaaggtccta 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttaagactatctcttcaataattacagtagcaactctcaaaacaatgtatcaaggtcctg 612
Query: 413 cagggtttatttaaatgcctatttccgggcatcactccaagaaacggaaactcatgacgt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cagggtttatttaaatgcctatttccgggcatcactccaagaaacggaaactcatgacgt 672
Query: 473 ctggaagggacctggggtaggtgagtatttaacatgtgcccctacatgtctctaaaagcg 532
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 673 ctggaggggacctggggtaggagaatatttaacatgtgcccctacatgtctctaaaagcg 732
Query: 533 agccagaggacaaatgatagtggactcagttacctaagcatccttgagtttttatttcac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agccagaggacaaatgatagtggactcagttacctaagcatccttgagtttttatttcac 792
Query: 593 tgagtgtgtacgtctgtggccccccactgaatcac 627
|||||||||||||||||| ||||||||||||||||
Sbjct: 793 tgagtgtgtacgtctgtgaccccccactgaatcac 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
