TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGATCTTCCTCACCACACAGTGGAGGTCAAGTATGGAGTTGTGA
TAGATCATACATTCAGCCTATCTCTGGATGCGTGTTTCCAATAGTAGTCA
TTGGCAACACCCTTCTCACACATATTTACGTCCCAGGTGCATGCTCACAC
ATGTACCCATACATGTACAACATGGCCAAAGTTAAACATGTAAGGGAGGG
CTTCCAAATCACAAAAGAATATGGCTGAAAAACTGGAATTTTCACTTCTT
AGCCATTTGTCTCCATTCCCTTTAAACTGTTCTACACTTGGGCTGGAAGT
CCAGATGTCCCCTTAAGTGGGAACTCAGAGTGGGAATTTAAGAGAAGACC
TTCCTCCTCTCCCCTGGGAGTAACCCACTCCTTACAAGGGGGTGGACCCC
TAGCTTGGAGAATGGGCTTCCATCTCAGCACCATAGCCTCAAGCCCACAG
CATCAGCACAGCTGGCAGCAGCGAGACTGAGTCAGAGGCCATGGAGAGGA
AGGCTCAGGGAGGCATGTCTGTGTGGATGCTCACTGCGGGGTGGCTGGGT
GTTCTTCCTTAGTTTTACACTGTTTATCATTTCCTTCAGGTGTTTCTCTG
TCCCCTCTCCCTTATCTTTTACCCTATCTATATTAATTGTTCTTATACCA
TGAATTCTGCCCTTAAATTTAGATAATAAACCTTCACTTCACAAAAAGTG
A

NGGAGGGGGGNNACNTACTCTGAAAATCTAATCTGTGTAAGGGTGGGGGG
GGGGGGGGGGTTTCAAAAGGGGGGANGNNAAGGTTTTCAAAAAAGGGGGA
GAGAAAAGGGGGAGGGAGGGGAAAGAGAGGGGATGAAAGAATATATAGGG
TTTATGGGGATTGAAGGGGGGAAGTGGATGTGATATATAAGGGGAGAGGG
TTGTTTAGAGTGGTGAATGTAAGATAAAAAAGGAAATAAAGGGAAGAAGA
GAGGGGGGGGAGGGAGAAGATTGATGAAGGAAAAGGGTAGAAAATAATTT
TTTGAATAGTAAGAAAAGAGGGAGAATATTTTTTTTTTGAAGAGGTGGAT
GGTAAGGGGGGGTATGAGGTAGTGAGATGATGATTGAAAAGGGGGAAAAG
GGGTGGGGGGTGATGTGGAGGGGGTTAAGGGCCCCCCCCAGGAGCAGAGG
GGTGCTGCGGGAATTAGGAGGTAGGGGTGGGAGAGGCTGTAACTAATGTG
AGGGTGGTGGGAAAGAGAGGGGTGGTGATGGATTTGTAACAGTGTGACAA
TGATGATGGGTTATTAGTAATGAGGAAAGTGGGTGAGTGTAATGTTAGTG
AGGTTTAATGTTTTATATGGGTAAGAGGAGGATTATTTGATTGGTTGGGT
GGGGTGAGGAGAAGGATGGAGAATTGGTGCTTCAAAGATATCGAGTTATA
TTAATAGGGAACAGAGGGAGAGAGGAAGGGGGAAGAGGAGGCGAAATAGG
CAGAACGCACCATTATAACTAATGAGTAAGTTGTATATAAAAGTGGGTGA
ATAAAAGTAGATGGAGGAAGTGG

Query= MSMg01no194_m05.b1 MSMg01no194_m05.b1 CHROMAT_FILE:
MSMg01no194_m05.b1 PHD_FILE: MSMg01no194_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:44 2005
         (593 letters)



>mm_chr11_12253959_12254951
          Length = 993

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%), Gaps = 2/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgatcttcctcaccacacagtggaggtcaagtatggagttgtgatagatcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgatcttcctcaccacacagtggaggtcaagtatggagttgtgatagatcat 264

                                                                       
Query: 65  acattcagcctatctctggatgcgtgtttccaatagtagtcattggcaacacccttctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acattcagcctatctctggatgcgtgtttccaatagtagtcattggcaacacccttctca 324

                                                                       
Query: 125 cacatatttacgtcccaggtgcatgctcacacatgtacccatacatgtacaacatggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatatttacgtcccaggtgcatgctcacacatgtacccatacatgtacaacatggcca 384

                                                                       
Query: 185 aagttaaacatgtaagggagggcttccaaatcacaaaagaatatggctgaaaaactggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagttaaacatgtaagggagggcttccaaatcacaaaagaatatggctgaaaaactggaa 444

                                                                       
Query: 245 -ttttcacttcttagccatttgtctccattccctttaaactgttctacacttgggctgga 303
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttt-acttcttagccatttgtctccattccctttaaactgttctacacttgggctgga 503

                                                                       
Query: 304 agtccagatgtccccttaagtgggaactcagagtgggaatttaagagaagaccttcctcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtccagatgtccccttaagtgggaactcagagtgggaatttaagagaagaccttcctcc 563

                                                                       
Query: 364 tctcccctgggagtaacccactccttacaagggggtggacccctagcttggagaatgggc 423
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 564 tctcccctgggagtaacccactccttacgagggggtgaacccctagcttggagaatgggc 623

                                                                       
Query: 424 ttccatctcagcaccatagcctcaagcccacagcatcagcacagctggcagcagcgagac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttccatctcagcaccatagcctcaagcccacagcatcagcacagctggcagcagcgagac 683

                                                                       
Query: 484 tgagtcagaggccatggagaggaaggctcagggaggcatgtctgtgtggatgctcactgc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagtcagaggccatggagaggaaggctcagggaggcatgtctgtgtggatgctcactgc 743

                                                             
Query: 544 ggggtggctgggtgttcttccttagttttacactgtttatcatttccttc 593
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggggtggctgagtgttcttccttagttttacactgtttatcatttccttc 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)