BAC Information

Click to search

BAC

Clone NameMSMg01-194O14
Chromosome11 (Build37)
Map Location 71,037,030 - 71,037,385
singlet/doubletsinglet
Overlap geneNlrp1b
Upstream geneBcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
Downstream geneNlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194O14.T7 (MSMg01no194_o14.b1)MSMg01-194O14.TJ (MSMg01no194_o14.g1)
ACCAG383651AG383652
length741742
length of high quality
(start - end)
660 (45 - 704)596 (77 - 672)
definitionCHROMAT_FILE: MSMg01no194_o14.b1 PHD_FILE: MSMg01no194_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:56 2005CHROMAT_FILE: MSMg01no194_o14.g1 PHD_FILE: MSMg01no194_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATATAATCCCAAATTCCTCAACAGTAATGATAGAACCGTTGGTTG
TCCTATAACCGCCATGCCACTGTTGCCCCACTGAACATGTCTTCCCTAGT
ACAGTATTTTAGCATTCAGGGTCACTGCCAGGCAATAGCATTGATGGTTT
TTCTCCACTAGTGTCTACATAGCAGCCCCCAGCCCTAGCCAGCATAGAAG
AAATTGCATTTCTATTTCAATTTGATTTCTTTAAGTCCTGTAACAAATAT
ATGTTGTGTCTTCAGTAATAGAGTCAAACTCTTGTTCTGTTAGGTTACCG
AGAGCAATGGCAACAGGCTATGTTGCTTTTGGAGTCTCTGCTTCCTCCAT
GACCAGTAACTCTTTACGAGGTATTGCATACTTAACACTGAGATTTGAAT
TTAGTAGCTCATGACTTCTGAGGGAAACACCATTCACTCATTGCCTACAT
TTATCTAATTTATATTTTTGATTAACTTCAAAGTAGTATGTTTCCATAAG
TAAATTTTATACATTGTTAGTTTTCATTAATCCAGTCCCACCCACACCTT
TCCTGTCACACAATTCCTATCACTTAAATTTAAATCCCATTTTCATATAG
TAAATGTTCTACTCTATCTTTAACCCTCAAGTCCTTTTACCCAACCCATC
TCTTGGACTCATTAGAGTTTCCTGACCTCTAGAAACGCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAAAGAAACTGGCTGAAGCTG
AGGCAGGAGCATCTCCTCTCCTCAGGTCCATCTCAATAGACAAGACCTTC
TTGGAGCTTCAGGACCTCCCTAATCCCCAGGATTTTCAGTGCCCACTCAG
ATTCTTATATTAGCTCTGGATGCCAGCTGGGCTAGGCATGCTGCTGTCCC
ACATGGGTTCCAGCTTCCCCACCTGTCAATAGCAATTTCAGCGCACCAGA
GCCCAAAGGATCATTTCTAGTCTGTGACTCTTAGCACTCCACCATGCTGC
TCTGGCCTTTCATTTGAGTTCCTTGTCCCAGTTTTCCATACAGGGGAAGG
CTCAGGTGGGAAGAACCACATCTCTGTGACTCAAAGTCCCATCCATAGCT
TTCAGGAGAGCTAAGTCTTTCTTCTCCATCCAGATCTGTTAGATTTCAAT
TAATTTCTCCTTTTAGATCTGAAAATGCCTTCCAGACTCATGGTCTGAGC
TCAGTAGTTTTGAGGAACTATGTATGGCAGGGAACTGCATTTTGAGTGTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTACTTCCTTTCCATCCC
TTTTCTTTTCATTTCTTCTCAATCTTTCCTTCTCTTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_o14.b1 MSMg01no194_o14.b1 CHROMAT_FILE:
MSMg01no194_o14.b1 PHD_FILE: MSMg01no194_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:56 2005
         (660 letters)



>mm_chr11_71036326_71037385
          Length = 1060

 Score =  673 bits (348), Expect = 0.0
 Identities = 354/356 (99%)
 Strand = Plus / Minus

                                                                        
Query: 305  cgagagcaatggcaacaggctatgttgcttttggagtctctgcttcctccatgaccagta 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 cgagagcaatggcaacaggctatgttgcttttggagtctctgcttcctccatgaccagta 1001

                                                                        
Query: 365  actctttacgaggtattgcatacttaacactgagatttgaatttagtagctcatgacttc 424
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 actctttaggaggtattgcatacttaacactgagatttgaatttagtagctcatgacttc 941

                                                                        
Query: 425  tgagggaaacaccattcactcattgcctacatttatctaatttatatttttgattaactt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  tgagggaaacaccattcactcattgcctacatttatctaatttatatttttgattaactt 881

                                                                        
Query: 485  caaagtagtatgtttccataagtaaattttatacattgttagttttcattaatccagtcc 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  caaagtagtatgtttccataagtaaattttatacattgttagttttcattaatccagtcc 821

                                                                        
Query: 545  cacccacacctttcctgtcacacaattcctatcacttaaatttaaatcccattttcatat 604
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  cacccacacctctcctgtcacacaattcctatcacttaaatttaaatcccattttcatat 761

                                                                    
Query: 605  agtaaatgttctactctatctttaaccctcaagtccttttacccaacccatctctt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  agtaaatgttctactctatctttaaccctcaagtccttttacccaacccatctctt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)