BAC Information

Click to search

BAC

Clone NameMSMg01-195M01
Chromosome11 (Build37)
Map Location 79,102,642 - 79,102,929
singlet/doubletsinglet
Overlap genenone
Upstream gene2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195M01.T7 (MSMg01no195_m01.b1)MSMg01-195M01.TJ (MSMg01no195_m01.g1)
ACCAG384148AG384149
length726729
length of high quality
(start - end)
315 (45 - 359)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no195_m01.b1 PHD_FILE: MSMg01no195_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:03 2005CHROMAT_FILE: MSMg01no195_m01.g1 PHD_FILE: MSMg01no195_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATGTAGAGCAGGTTTCCCTTGAACTCACAGAGGCCTACCTGCC
CCTGCCTTTATGGTGTGCAGATCAAAGCTGCCCACTCCCACCCGTTTCTG
TGAATGAAAATATCTCTCATGAATGAAGATATCTAAGGACTGGAGAGATG
GCTCCATGGTTAAGAGCACTTACTGCTCTTTTAGAGGACCCTCGTTTGAT
TTCCAGCACCCACATGGTTCTCACAACCATTTGTAGCTGCAGGTCTAGGG
GACCCAATGCCCTCTTCTGGCCTCTGAGAGCACTAGACCCACACAAGGTA
CACAGATTATAGATAATGAGCACCCCCACGGCTTAGTGGATGAAAATGCT
TTCTGCCAAGCCTGGAGACATGAGTTCGATCCCCAGGACCTCTTAGAATA
AAAGAAGAGAACCAACTCCCCCCAACTTGCTCCTCCCTACCCTGACCTCC
ACATGTGGGTCATGCCATGTATTCGTGTATGCAGAAATAAATAAATTGTG
ATTTTTTTAAAAAAAATGTTTAAATGAATCCATTATTTATAAAAAGAGAA
AGATGAGGGACAAGGGTGTGCCTCAATTGGCAGAGCCCTTCCCTATATGC
ATCAAGTCCCAGGTTTGGTTTTTAGTGCCATATAAACCATGAGTGGTGAC
ACTTGCCTGTAATCCCAACACTTAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGATTGCAGAGGAGTGTTCTA
TTGCTTGCAAAGCAAGCTCAGGAGAAAAAGGCTTTGCTGCAATCACACTG
CGAATTGTTCTATGTCACTCAGTATTGTGTGACACAGTGGCTTCCAGGCT
CTGCCTCTCCCTGGCTGACTTTTTTTCTAAGCTTACTGTAACTCTTCTTT
TTAAAGACTTGTTTATTTTTATTTAACATGCATGAACCTTTTGCCTGATT
GTGTGTCTGTGCACCATGTTCATGCCCTCAGAAGTTGGAAAGCATCAGAT
GCCCTGGAACTGGATTTACATGCTGCCGCCACCTGCCAAATGGGTGTCAG
GAAATGAACCCAGGTCCTCTGGAAGAACAAGCAATGTTTTTGTTTTGTTT
TGTTTGTTTTGTTTCCCAAGCTGAGGCTGTCCTGGAACTCACTCTGTAGA
CCAGGCTGCCAGGCTGGCTTTAAACTCACAGAGATCTGCCTCCCTCTGCT
TCCCAAATCCTAGGATTACAAGAATGTGCCATCAGCACCAAGCTGTTTGG
CTTTTAATGTATGTGTGTGTGTGTGTGTGTGTGAGCTGCCTAACCTTACA
CTCCTTCATCTCTCACTATTTTTCCACCTTCTTTTACCCCTCCCATTTCA
CCTTTAAATATCTTCCATACTCCTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_m01.g1 MSMg01no195_m01.g1 CHROMAT_FILE:
MSMg01no195_m01.g1 PHD_FILE: MSMg01no195_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:03 2005
         (289 letters)



>mm_chr11_79102545_79103233
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagattgcagaggagtgttctattgcttgcaaagcaagctcaggagaaaaaggctttg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgagattgcagaggtgtgttctattgcttgcaaagcaagctcaggagaaaaaggctttg 326

                                                                       
Query: 61  ctgcaatcacactgcgaattgttctatgtcactcagtattgtgtgacacagtggcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcaatcacactgcgaattgttctatgtcactcagtattgtgtgacacagtggcttcca 266

                                                                       
Query: 121 ggctctgcctctccctggctgactttttttctaagcttactgtaactcttctttttaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctctgcctctccctggctgactttttttctaagcttactgtaactcttctttttaaag 206

                                                                       
Query: 181 acttgtttatttttatttaacatgcatgaaccttttgcctgattgtgtgtctgtgcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acttgtttatttttatttaacatgcatgaaccttttgcctgattgtgtgtctgtgcacca 146

                                                           
Query: 241 tgttcatgccctcagaagttggaaagcatcagatgccctggaactgga 288
           |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 145 tgttcatgccctcagaagctggaaagcatcggatgccctggaactgga 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)