BAC Information

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BAC

Clone NameMSMg01-195N08
Chromosome11 (Build37)
Map Location 108,137,286 - 108,245,829
singlet/doubletdoublet
Overlap genePrkca
Upstream genePitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195N08.T7 (MSMg01no195_n08.b1)MSMg01-195N08.TJ (MSMg01no195_n08.g1)
ACCAG384199AG384200
length725752
length of high quality
(start - end)
461 (55 - 515)310 (82 - 391)
definitionCHROMAT_FILE: MSMg01no195_n08.b1 PHD_FILE: MSMg01no195_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:10 2005CHROMAT_FILE: MSMg01no195_n08.g1 PHD_FILE: MSMg01no195_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,137,286 - 108,137,741)(108,245,544 - 108,245,829)
sequence
AACGCAACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGA
GGATCCGCGGAATTCAGAGCGTTTCCTTCTTTTGTGGAGTCTCTGTGTAC
ATAGAATCATTGACTCTCACCTCTAACTTCCCAGAACCATCAAAATGTCA
CTGGGAGTAGAGAACAAAGCACTCTGGCTGACAACCACTAGGTTTAAGCT
ATCATTTTTTTCTCTAGTCTGTAATATGTTTTTCTGTTTTATTGTATATT
AAAGCAATTCATCTTGAAAGAACAGAAATAAATGGCAATCACTGAGGCCA
ACATTTAATCATTACTCAGAGCTGAAAACCCCCTTTTTTCCTTAAGTGCG
TGGGATGCCCCCAGCCAAGGACAGAGAAGTGGACCTCTCTTGCATAGCAT
TAGGACATTATACATTCCTCTGGTCACCCTGAGACCATCCATGTCTTGGA
GGAAAGCCAACTTTCTTCACCAGAATGGCTCTCCCAGCAAACCCCTCCTT
GTCTTTCCTTGCAAAGAACTGTATGAGAAAAACACAAAACAGTCTCTCTT
CCTAATACCTTGTTCCCTGCCTTGGCTTTAGAAGACTTTCTTCTCAGCTG
CCGAACAACCAAATGTGTCCTCATGTCACCCGATTCCACAGCAAATGGAG
TTTCGGGTCCCTTCCCTAATTACTGCCTAACTGGTAACTCACTGGCGGGG
GTGCATGTCTTTAATCCCACCCCTG
CTTTTTTNNTCAATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGAATTTCACTTAC
CTGAGCTGCTACTGAGCTATACTTTGTGGTTGATGTTTTACTGGACTTCT
TGAAATTAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACAAAACAACAAACCG
ACAGAAATTTGTAGTTTAGTAAGTCTGAGATACGAGGTTATAAATAAAGT
AACAAAGGAGAGGCACTGTGTTTCCTTGCTTGTAAGGATATAATGATAAA
AATGGAAATACCTCTGGCATGCCAAAACAAGTGAGCACAAAACAGCATGG
GGCACGCTGACAGCTGTTAACAGCTGAACGTCACCAGTGCAGAACAGTTC
AGGCGATGAATAGCACAGAATGTGGCTGGAGGTGAGTGATAATTAGATCA
AAAGCTCTCTGCAATGATCTTGAACTCATCTTGTAATCAGTAAATGGTAT
GTACCAGGTCAAGCTGCTACTTTGGAAATATAATCACCCCCAGCGTAATG
GCACTCTTTACCAGGAATCAAGACATTTTACGGGCCGACAAGTCAACTCT
CCTAGATTTCATTTGCCGTGTGTTTTTGTTTACTAATTTTTACTTTTAAT
CATTTTTGTTNCGCGTACTTCCTATATTACTCTTACTTCCCCTCAATTCC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_n08.b1 MSMg01no195_n08.b1 CHROMAT_FILE:
MSMg01no195_n08.b1 PHD_FILE: MSMg01no195_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:10 2005
         (461 letters)



>mm_chr11_108137081_108137941
          Length = 861

 Score =  789 bits (408), Expect = 0.0
 Identities = 444/456 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagagcgtttccttcttttgtggagtctctgtgtacatagaatcattgactctca 65
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagagcgaatcgttcttttgtggagtctctgtgtacatagaatcattgactctca 265

                                                                       
Query: 66  cctctaacttcccagaaccatcaaaatgtcactgggagtagagaacaaagcactctggct 125
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 266 cctctaacttcccagaaccatcaaaatgtcactgggagtggagaccaaagcactctggct 325

                                                                       
Query: 126 gacaaccactaggtttaagctatcatttttttctctagtctgtaatatgtttttctgttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gacaaccactaggtttaagctatcatttttttctctagtctgtaatatgtttttctgttt 385

                                                                       
Query: 186 tattgtatattaaagcaattcatcttgaaagaacagaaataaatggcaatcactgaggcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tattgtatattaaagcaattcatcttgaaagaacagaaataaatggcaatcactgaggcc 445

                                                                       
Query: 246 aacatttaatcattactcagagctgaaaacccccttttttccttaagtgcgtgggatgcc 305
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 aacatttaatcgttactcagagctgaaaacccccttttttccttaagtgtgtgggatgcc 505

                                                                       
Query: 306 cccagccaaggacagagaagtggacctctcttgcatagcattaggacattatacattcct 365
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 506 cccagccaaggacagagaagtggacctctcttgcatagcattagggcattagacattcct 565

                                                                       
Query: 366 ctggtcaccctgagaccatccatgtcttggaggaaagccaactttcttcaccagaatggc 425
           |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 566 ctggtcactctgagaccaaccatgtcttggaggaaggccaactttcttcaccagaatggc 625

                                               
Query: 426 tctcccagcaaacccctccttgtctttccttgcaaa 461
           ||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctcccagcaaacccctccttgtctttccttgcaaa 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no195_n08.g1 MSMg01no195_n08.g1 CHROMAT_FILE:
MSMg01no195_n08.g1 PHD_FILE: MSMg01no195_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:10 2005
         (310 letters)



>mm_chr11_108245191_108245900
          Length = 710

 Score =  484 bits (250), Expect = e-141
 Identities = 284/310 (91%), Gaps = 24/310 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctgaatttcacttacctgagctgctactgagctatactttgtggttgatgttttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 639 cttcctgaatttcacttacctgagctgctactgagctatactttgtggttgatattttac 580

                                                                       
Query: 61  tggacttcttgaaattaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 120
           |||||||||||||||||||                       ||| |||| |||||||||
Sbjct: 579 tggacttcttgaaattaaa-----------------------aaa-aaaggaagaaagaa 544

                                                                       
Query: 121 agaaagaaagaaagaaagaaagaaagaaagaaaacaaaacaacaaaccgacagaaatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaaagaaagaaagaaagaaagaaagaaagaaaacaaaacaacaaaccgacagaaatttg 484

                                                                       
Query: 181 tagtttagtaagtctgagatacgaggttataaataaagtaacaaaggagaggcactgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tagtttagtaagtctgagatacgaggttataaataaagtaacaaaggagaggcactgtgt 424

                                                                       
Query: 241 ttccttgcttgtaaggatataatgataaaaatggaaatacctctggcatgccaaaacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttccttgcttgtaaggatataatgataaaaatggaaatacctctggcatgccaaaacaag 364

                     
Query: 301 tgagcacaaa 310
           ||||||||||
Sbjct: 363 tgagcacaaa 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)