BAC Information

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BAC

Clone NameMSMg01-196F01
Chromosome11 (Build37)
Map Location 26,092,039 - 26,092,263
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F01.T7 (MSMg01no196_f01.b1)MSMg01-196F01.TJ (MSMg01no196_f01.g1)
ACCAG384469AG384470
length773770
length of high quality
(start - end)
42 (302 - 343)225 (80 - 304)
definitionCHROMAT_FILE: MSMg01no196_f01.b1 PHD_FILE: MSMg01no196_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:49 2005CHROMAT_FILE: MSMg01no196_f01.g1 PHD_FILE: MSMg01no196_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTTTTTNNCNTTTNCNTACTCACCCGAAGCNCCCACGGGNATTN
NTATTTATAAATTGCGGTCGCTAATAGACTCATAAATCCAANNNGGGGNG
NAANNNANAANTTTAACTGGAGGAGGGANANAGNAANNGNNNNNNGNNNN
GANNNANNNNNANNAATTTTACCCCCAAAAAGAGGGANNNAACANGGGNC
NNNNGAAGANNNNAANNCGAGGAGAGGGAGAAAAGGGAGAAAAGGCAAGN
GGNNACGGGNAAANANNNNGGGNANANNAAAGGNNNAANAANANGGNANA
GATTTTTTTTTATAANAAATGTATTATTNATTAATTTTTTGGNATATAGA
AAATTGNNAAAAGAAATTTTTATATTTTTGNNNGGGNGAGANAAGAAAAG
ANGNANAATTTTTTTTTCCCCCTGACGATGTTGATTGTCTTTATGTTATG
TTTGTGATGTGTACCCCAAAGTAAGAAATTAAATGCTTTTTTTTTGCCTG
ATTATATATTAGGAGTTAGATTAGTTTTATTTATTTTAATTAATTTTTTT
TTTTTGGTCTTTTTAATAATTTTTACGCTTTTTCACTACTTTTTTATTTT
TTTTTTGTTTTGGAATTTATATCTTAGTGTATCCTGTTTTTCCTGTTTTT
ATTATATTTTCTTTTATTAAAGTGTTGATTATTCGATTTTTGTGGTCTTT
TATTTTATTTTTTTTTTTTTTTTTAGGGGATGTTTTTTTTATTTTTTATT
TTTTTATCATATACCATTATTGT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTTATTATTCTAAGTCA
TCTAGCCACAAGTGCTTCCGTGCCTTCCTGTGTACAAATTGGAAGCTTGA
AAACAACATTTTAACTTTTAGGTCTTCATTTTATTTTAAATCATATGTGC
TTCTAAATAGGTATATACATATGAATGTGAGTGTGCCTGTGGAAGTCAGA
GGCCACAGATCTCCCTGGGGTTGAAGTTATAGGTGGTTGTGAGCTGCCTC
CAATGGCCCTGGGCAACCCCCTTTTTTTTTTTTTCCAACCCAGAGAGCAC
CCACAGCCGACTTTTAGATCCCTCCCGTGCCGGAGCCCCCCNNAAAAAAT
TTTTAGTGTTTTTGTGTTTTGGCCCCCCAAAAAAAAAAAAAAAAAACTTG
GGGGGGGGGTGTGTCCTTCCTCTACCTTTCTTCCCCCTTTTTCTTTCACC
TATTGTCTCTTTTTTCATTCTCCTTATTCCTCAATCTCTCCCTATATACA
ATTACTCTCTCTTTTCCTCTTCCCCATTTTCCACTCCCCCTCTTTTCTCT
TCTTCTTTTTTCTTCTCTATACTCCTGTTCTCCCTATATATTTATTTCTC
TTTCTCCCCTCTATTATTTTTTTCCCCAACACCTATCCCTCCTCCTCTTT
CTCTTTTCCACGCCTCCCTCTATAATTTCATTTACATCTTGTTTCCTCTC
TGTTCTATCTTTCACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f01.g1 MSMg01no196_f01.g1 CHROMAT_FILE:
MSMg01no196_f01.g1 PHD_FILE: MSMg01no196_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:49 2005
         (225 letters)



>mm_chr11_26091839_26092463
          Length = 625

 Score =  389 bits (201), Expect = e-113
 Identities = 219/225 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgttattattctaagtcatctagccacaagtgcttccgtgccttcctgtgtacaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| 
Sbjct: 201 atttgttattattctaagtcatctagccacaagtgcttccgtgcctttttgtgtacaaac 260

                                                                       
Query: 61  tggaagcttgaaaacaacattttaacttttaggtcttcattttattttaaatcatatgtg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagcttgaaagcaacattttaacttttaggtcttcattttattttaaatcatatgtg 320

                                                                       
Query: 121 cttctaaataggtatatacatatgaatgtgagtgtgcctgtggaagtcagaggccacaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 321 cttctaaataggtatatacatatgaatgtgagtgtgcctgtggaagtcagaggccagagg 380

                                                        
Query: 181 tctccctggggttgaagttataggtggttgtgagctgcctccaat 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctccctggggttgaagttataggtggttgtgagctgcctccaat 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)