BAC Information

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BAC

Clone NameMSMg01-196J19
Chromosome11 (Build37)
Map Location 47,726,947 - 47,727,319
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196J19.T7 (MSMg01no196_j19.b1)MSMg01-196J19.TJ (MSMg01no196_j19.g1)
ACCAG384662AG384663
length811759
length of high quality
(start - end)
281 (45 - 325)557 (77 - 633)
definitionCHROMAT_FILE: MSMg01no196_j19.b1 PHD_FILE: MSMg01no196_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:13 2005CHROMAT_FILE: MSMg01no196_j19.g1 PHD_FILE: MSMg01no196_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGTGGAAATTTTAGGGTCACACACACATATATACATTATCATA
TCACCGGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATTTATATCCC
CTTGATCTCCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAA
TGTTGAATAGGTAGGGAGAGGGTAGGCAGCCTTGTCTAGTCCCTGAATTT
AGTGGGATTGCTTCTAGCTTCTCACCATTTACTCTGATGTTGGCTACTAG
TTTGCTGTAGATTGCTTTTATCATGGTTAGGTATGGGCCTTGAATTCCTG
ATCTTTCTATTATTTTTATCACGCCCGCCCGCTGGATTTTGTCATATGCT
TTCTTTGCGTTTTTCCCCCCTCATAAAAAAAAAAATTAATTTTTGGGGTG
GGTTCCCTTTTGCCCACTCCTACATACTTAATCCTTTTTCTCCCAGCGTG
TTTTGATCTTCTTATTCCCTCCCTTTTTTTCCCTTCCCTGTTTTTTCTCC
CCGCTTCTTCACACCTTTTTTTCCATCCTTTTTCTCGCTTCATTCTACTT
AATTTACTCTCTATTTTTTCTTTCTCATTGCTTCCCCTTTTTCTCTCTTT
TTTATTTATTTGTTCACCCTTTTTTTTCCCCTCCTCTCTCTATCTAACTA
TTTATTTGCACCCACCTATTTTTCATTACCCTCCTCTTTCCAACGATGAT
CCCCAATATTATTTTCCTTCTCTAATTCCCCCCCTTTTTACTTTTAATAT
ATATATTATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTGACTGTAGCTATATGGGGCA
TAAAAGCACCTTAAAAACAAATACTTGCCAAAAGTCCTGTTTCACCATTG
GTCAATACAAAGGTTCTTGGTTATATGTTGGTCATGGTAAGCAATGAAGA
AACTCTAGAGTCTGAGAGAAATAACAGGGTCATGTATAAGGAAATTAATT
TCCCAAAGGCCAGATGGTAATTCTACAGTCCAAGTCTATCTTGGTGTGAT
GTTTATTAAGTCCTGAGCATCAGCAATCACATTTAGGAAGGTACAAAGAT
TCTGTAGGTATAATGCATAATGTCTACCTCACCTGAAAGATAGAAAACCT
AGGTAAAGCAAAGATAAGGAAAGTAGAGCAGAGAAGTCTTAAAGCATGTT
AAGTAAAGACTTTTCACTTAGAATGTTTAAGAATCAAGAGAAGTGAGTTC
AGTTTCCTCTCCCATCATTTGCAAGTAAAGTAGGAAAAAAAAAGAGCAGA
TTGGCATGTGCCTTTGGGTATTAGGTTTTCAGAATCTTGATAAAAAGCTC
TTATCTTCCTCACTGTTCCACTCTACTGTGATAAATAAAGATGAAATATT
TGCCAACACTAAAGAGAATAGTTTACAAATTGTCAGGTATACTCTCTACA
ATTCTCTAAGGGCTGTCCAATGTTTGCCTAAAATCCTTCATTGGCCAAAA
ATTTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_j19.g1 MSMg01no196_j19.g1 CHROMAT_FILE:
MSMg01no196_j19.g1 PHD_FILE: MSMg01no196_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:13 2005
         (557 letters)



>mm_chr11_47726756_47727712
          Length = 957

 Score =  644 bits (333), Expect = 0.0
 Identities = 359/373 (96%), Gaps = 9/373 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgactgtagctatatggggcataaaagcaccttaaaaacaaatacttgccaaaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tattgactgtagctatatggggcataaaagcaccttaaaaacaaatacttgccaaaagtc 251

                                                                       
Query: 61  ctgtttcaccattggtcaatacaaaggttcttggttatatgttgg---------tcatgg 111
            | ||||||||||||||||||||||||||||||||||||||||||         ||||||
Sbjct: 252 atatttcaccattggtcaatacaaaggttcttggttatatgttggaagtcatggtcatgg 311

                                                                       
Query: 112 taagcaatgaagaaactctagagtctgagagaaataacagggtcatgtataaggaaatta 171
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 312 taagcaatgaagaaactctagagtctgagagaaataacagggtcatgtttaaggaaatta 371

                                                                       
Query: 172 atttcccaaaggccagatggtaattctacagtccaagtctatcttggtgtgatgtttatt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atttcccaaaggccagatggtaattctacagtccaagtctatcttggtgtgatgtttatt 431

                                                                       
Query: 232 aagtcctgagcatcagcaatcacatttaggaaggtacaaagattctgtaggtataatgca 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 432 aagtcctgagcatcagcaatcacatttaggaaggtacaaagattctgtaggtacaatgca 491

                                                                       
Query: 292 taatgtctacctcacctgaaagatagaaaacctaggtaaagcaaagataaggaaagtaga 351
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taatgtctacctcaactgaaagatagaaaacctaggtaaagcaaagataaggaaagtaga 551

                        
Query: 352 gcagagaagtctt 364
           |||||||||||||
Sbjct: 552 gcagagaagtctt 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)