BAC Information

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BAC

Clone NameMSMg01-197C16
Chromosome11 (Build37)
Map Location 25,436,806 - 25,437,444
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197C16.T7 (MSMg01no197_c16.b1)MSMg01-197C16.TJ (MSMg01no197_c16.g1)
ACCAG385008AG385009
length1,489716
length of high quality
(start - end)		---640 (77 - 716)
definitionCHROMAT_FILE: MSMg01no197_c16.b1 PHD_FILE: MSMg01no197_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:57 2005CHROMAT_FILE: MSMg01no197_c16.g1 PHD_FILE: MSMg01no197_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATAAGAAGGATGAAANACAGACAGCCANATAGGATATATTGTATAC
TATATCATCAAATAATAAAGATCACCAATAATATTTGCGCTGCCGTGCTA
ATTAACACACCAAAATAAATATGACCTCGGACGCGACCCACACCCTCAAT
AATCTCTCGCATCACCTTATCCCCCTATACCACGACACTGCTAAGCACGG
GGCCAGGCGCGCCACTAATGCGCAAGTGTTGAATATTGCCAGCCTACGCC
AAACCGATACGTCGTTCTTGTTGCTCTTACACCTGGCGTATTATACGCCG
CCGCCGCGTTACATATTCTCATGCACTCTAGTGTCGTCACTATTGTATAT
CTGCAACATAACACGTGAGATGCACGCACGTGGTGTGAATACACTATCAA
CCGTTACTTGTTGCTCCCCGGATCTTGGCGGCGTGAGGGGGTGTATTTCC
TATTAGACACACGCAACCTTCCAACGTAATAGAGAGTAAGGATGATGATA
AGTGAATGTGTANTAATGCCAAACTGCACTGAGGATTCGCGAGCGTATTG
CTAGTCGGAGGGAGAACGACGGATGAGCGTGAGGCGAGCGGTGGTGATAT
AACAAATATAATACAAACGATATATAAAGATAATATAAGGCTGACGTCGC
GTTGTGGAGCACGCGCGCCGCCTCGTGATATAGTNGTATCGAGCGCACAT
AGGAGTGTTGCGCGGCAGGAATAATATATTCTATTGTTATATATCCGCAG
TGTATGGTAGTCTATATTCGACACGCAGAGTCCAACAGAGTACACTTCAT
GTCGCGCAGACCGCCAACGTCCATGCGTAGTTTGCTGAAGCCGATACATA
AAGTAATGCAGAGCGTGATGATACGATAGTGACGGAGCGCTGTCGATCAG
CGACCTANCACAGTCAGATTGAATCTATCCGGGTGTTGACGTCTTACATT
CACTACAGTGTAGATTAACGCACAGTATATGATATATTGACGGCACCGCT
CATACGGAGACGGCGCGTACTCGTCTGCAGTAGTGTATCGATTATACGAT
ATGTATGAAGAGAGCGCACGACTTCGTGGGGTGTGCAGTTACGGGTCGTG
CGCCGGATACATAGACGCGGACCTATATATGTATCGATGATGATGATTGC
GCACTACGCGCGCACGTCATCCACGACGCACGCGACGCGATATATCCCAT
CATCAACAACATTATTATATAATTTGCGGCACGCGCACGATCGTCCACGN
GTATTGTGAAGTATGTAGTACTGCCATCAGTATCACGCGAATATGCTCGC
GAATGACTATATTCTTATATCAGCATCTATGTGCGCCGTCGACGACACAT
GTATCGCACACATATTAGCGTGTTGCGCGCTATACAACCGCGCGCGCAAT
ATGATGATACTAAGTATTAAGATATAACCACCGCCGCCACTCCCNCACGC
CTCACATGTATCTCGTGTATCGCTACGCCCACGCGCTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTATCTATCCTATTTTTTTA
TGAGAGAGTGCATAGCCAAAGTCTCATTCATACTTCATGATCTGTATAAA
ATCTATGTGATACGTAATGTATATGATCTTTAATGGTTTCTTTTATATCC
CAACAATAAATTCATGACAGGGTAAACTGGGTTTTCAAGGAGAGAGGTCT
TGAATGTGGTCAGTTATCTAGAGGTAGTTGGTTAGCCCTGAGACTGAGTG
TGCTAAGGGAACTTACAGCTCTCCCACCTCTGAGCTCAGTCACATACTGC
CCTAGGAATCTTTTTCCATATAGTGCTCCAAGAACCGCTAACCAGTGTTA
GCTCGGGCATTGGTGACTCTTTGGCTATCTGGGTGTTCACGGAGAAAGTC
CTGTAAAAATAGGTAGCAAGTAGACTGTGGAACTTTCTGGATTATTTTTG
TCTAACTGAGGAGGTGACAGGTTGTTCAGACCTTGGGAAGGACACATGTG
TAACAGATGTTGGTTTAGTTGTTCCCACCTTCCATTTTCTTCACTAGCTT
TTCAGGCTCTGCGTGGAAATTCACAGAAACACAAAGCCAGATTTTGTTAA
AAGTTGGCAAAAGATGAGAAAAGTGGAAGAGAGATAGGAAGGGATAGAGG
TTAGGCCAAATTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_c16.g1 MSMg01no197_c16.g1 CHROMAT_FILE:
MSMg01no197_c16.g1 PHD_FILE: MSMg01no197_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:57 2005
         (640 letters)



>mm_chr11_25436606_25437645
          Length = 1040

 Score = 1220 bits (631), Expect = 0.0
 Identities = 637/639 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttatctatcctatttttttatgagagagtgcatagccaaagtctcattcatacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atttttatctatcctatttttttatgagagagtgcatagccaaagtctcattcatacttc 780

                                                                       
Query: 61  atgatctgtataaaatctatgtgatacgtaatgtatatgatctttaatggtttcttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atgatctgtataaaatctatgtgatacgtaatgtatatgatctttaatggtttcttttat 720

                                                                       
Query: 121 atcccaacaataaattcatgacagggtaaactgggttttcaaggagagaggtcttgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atcccaacaataaattcatgacagggtaaactgggttttcaaggagagaggtcttgaatg 660

                                                                       
Query: 181 tggtcagttatctagaggtagttggttagccctgagactgagtgtgctaagggaacttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tggtcagttatctagaggtagttggttagccctgagactgagtgtgctaagggaacttac 600

                                                                       
Query: 241 agctctcccacctctgagctcagtcacatactgccctaggaatctttttccatatagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agctctcccacctctgagctcagtcacatactgccctaggaatctttttccatatagtgc 540

                                                                       
Query: 301 tccaagaaccgctaaccagtgttagctcgggcattggtgactctttggctatctgggtgt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 539 tccaagaaccgctaaccagtgttagcttgggcattggtgactctttggctatctgggtgt 480

                                                                       
Query: 361 tcacggagaaagtcctgtaaaaataggtagcaagtagactgtggaactttctggattatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcacggagaaagtcctgtaaaaataggtagcaagtagactgtggaactttctggattatt 420

                                                                       
Query: 421 tttgtctaactgaggaggtgacaggttgttcagaccttgggaaggacacatgtgtaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttgtctaactgaggaggtgacaggttgttcagaccttgggaaggacacatgtgtaacag 360

                                                                       
Query: 481 atgttggtttagttgttcccaccttccattttcttcactagcttttcaggctctgcgtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgttggtttagttgttcccaccttccattttcttcactagcttttcaggctctgcgtgg 300

                                                                       
Query: 541 aaattcacagaaacacaaagccagattttgttaaaagttggcaaaagatgagaaaagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaattcacagaaacacaaagccagattttgttaaaagttggcaaaagatgagaaaagtgg 240

                                                  
Query: 601 aagagagataggaagggatagaggttaggccaaattctg 639
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 239 aagagagataggaagggatagaggttaggtcaaattctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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