CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAACTATTTNTTGAGCCAAAAAAATTAAAATTAAAATTAAAAA
TTTTAAAAAAAGGAAAAAGAAGGAAGTCATGCAAACAGAAAAGATATTCA
TTTATTCATACATACAGAAAAAATATTCACTCACTCTGGATGAAACAGAG
AAAAGATTCTCCAATCAATCTTTATTCACAAACACAGGAAAAAAAACACA
TCTGGATAAAGCAAAGAAAGTAAAGCTCGAACAACCTTTATTTACTGTTC
TCAGTGCATAATGTTGTCTCTAAAAAATTACCTCATACAACTATCAGGCA
GAGTCATTACAGCAAGATAATTGATTACATGACTTTCTAAATACTTTACA
TTCCAATAAGTTCACAGTGAGTTTAAGGCAATAATTTATGTCATAAATCA
GTAAGACTTAAAGAATTGAAACAGAATTGTTTACATATCTTTCCATTAAG
ACTAGTATCTTACTAAATATTCATTATCTATCATCTAGACTCATAAGTTC
ATTAGAACTTTAAAGCAATACTTTTTATATCACAATTTAGCACAGTTTTG
CCAGGAGAAAAATCATCTGCCTAGTAATTTATTAGTTTGAAGTTTTGTAT
AGATAAACTAGTCAAGTCCACTTCCAGCTTAAGACCTTTAGCTACTCAAT
AATGGTCTCACAACTAACCTAGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTGTTGTGGGGTTTTGCTCT
GATTGTTGCCTTCACATCCTCTTAATCTAAGAATTTTAAGAAAACTCAAA
GGGGGCTTCCAGCCTCTTACTGGTGAGTATTATTGGCACTCACAATAATA
GTATTTGATTGTTTTTAGGTATTTCTACTGAAGCTCAGTCACCATCCTCA
GAAAGAACGTAGAAAATATAAATTGTCAGCAATGATCACTACCCTTAGAG
AGCAGTGGGAAAAATGAATTGTTAGTGAAGTTAGGTTAAGATGTTTTTGC
TAGTGTCTCTAATGTAGAAAATCTTAGGGAATGATTTGAAGTTCAGAATA
CACTTATTAGTTGAGCTAGGGACTAGGGACTTTTTTCAGTTAGGGAACAA
CGTGAATGGCAGTCTATCCAGCAAGAATTGGCTGATGTGACTCTCACTGA
GGCTGCACTAGTGATGATTGATCTATTGTACTCAATTTTTTGCCCCCGGA
TTTCTGATATGATTTAATAAAAATTGCAAACACATAGTTGTACATTCTGA
GAAGCTAAAGGAGAAATGGCTGGTTGTTTTTGCACAAAAGTTTAGATTTG
TGATTTCTTTAAGATTTTTATGATTACTGTTAAAAATAAATAATGAAATA
ACCACTCTTTTCTTTGTAACTGCAGATTGC

Query= MSMg01no198_n04.b1 MSMg01no198_n04.b1 CHROMAT_FILE:
MSMg01no198_n04.b1 PHD_FILE: MSMg01no198_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:10 2005
         (679 letters)



>mm_chr11_27248020_27249097
          Length = 1078

 Score = 1054 bits (545), Expect = 0.0
 Identities = 582/595 (97%), Gaps = 7/595 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaactatttnttgagccaaaaaaattaaaattaaaattaaaaattttaaaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 590 gaattcattaactattt-ttgagccaaaaaaattaaaattaaaattaaaaa-ttaaaaaa 533

                                                                       
Query: 65  aaggaaaaagaaggaagtcatgcaaacagaaaagatattcatttattcatacatacagaa 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 532 aaggaaaaagaaggaagtcatgcatacagaaaagatattcatttattcatacatacagaa 473

                                                                       
Query: 125 aaaatattcactcactctggatgaaacagagaaaagattctccaatcaatctttattcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaatattcactcactctggatgaaacagagaaaagattctccaatcaatctttattcac 413

                                                                       
Query: 185 aaacacagg-aaaaaaaacacatctggataaagcaaagaaagtaaagctcgaacaacctt 243
             ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 412 --acacaggaaaaaaaaacacatctggataaagcagagaaagtaaagctcgaacaacatt 355

                                                                       
Query: 244 tatttactgttctcagtgcataatgttgtctctaaaaaattacctcatacaactatcagg 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatttcctgttctcagtgcataatgttgtctctaaaaaattacctcatacaactatcagg 295

                                                                       
Query: 304 cagag-tcattacagcaagataattgattacatgactttctaaatactttacattccaat 362
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cagagat-attacagcaagataattgattacatgactttctaaatactttacattccaat 236

                                                                       
Query: 363 aagttcacagtgagtttaaggcaataatttatgtcataaatcagtaagacttaaagaatt 422
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 235 aagttcacagtgagtttaaggcaataatttatgtcataaatgagtaagacttaaagaatt 176

                                                                       
Query: 423 gaaacagaattgtttacatatctttccattaagactagtatcttactaaatattcattat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaaacagaattgtttacatatctttccattaagactagtatcttactaaatattcattat 116

                                                                       
Query: 483 ctatcatctagactcataagttcattagaactttaaagcaatactttttatatcacaatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctatcatctagactcataagttcattagaactttaaagcaatactttttatatcacaatt 56

                                                                  
Query: 543 tagcacagttttgccaggagaaaaatcatctgcctagtaatttattagtttgaag 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tagcacagttttgccaggagaaaaatcatctgcctagtaatttattagtttgaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space:   714492
Effective search space used:   714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)