BAC Information

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BAC

Clone NameMSMg01-198P18
Chromosome11 (Build37)
Map Location 36,033,577 - 36,033,890
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198P18.T7 (MSMg01no198_p18.b1)MSMg01-198P18.TJ (MSMg01no198_p18.g1)
ACCAG386092AG386093
length738735
length of high quality
(start - end)
317 (45 - 361)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no198_p18.b1 PHD_FILE: MSMg01no198_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:23 2005CHROMAT_FILE: MSMg01no198_p18.g1 PHD_FILE: MSMg01no198_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAGTCTCCTCGGGAGAAAGCATAGGTAGAGGAAAAGCCCACGTC
CTGTCTGAAGATGCATATTACACAGTCCCGAATTCAAGTTTGTGCCTATC
CTGTTTCATTTGGATCAGTTTCTAGAACATTCTGGGCCTGAATTTCTCAG
AGATGAGATTCCTGCTCTTGGAGCTGAAGTTACACTATGTTATGTTGGAT
ATGTGATAGTTATCCTTTCTTTTTCTTTGAAATATTCCGGCGGTGTTCTC
CCCACCCTTCTCTCTGAAATGGACTGAAAAATTCTGTTTGGAGAAGCCCT
TTTGATACAATTTTTTGCTTACCCGCCCCCCATCCGAATCACTCAAACTG
CCACCAGATTACCAAATGCCAGCCCTGTTAGCTGTGCCATTGGCTGCTCT
TGTCTTTTAATTGCTCCTGTCCCCACCTCCCCATGGTTCTGTGTTTTTTT
TCTCTCTGCTTTTTTAGCACCTTGTTAGCACCTATTTTTCTCCCCTACGC
GAATACAGTCGCCTGATTGCCTCAATGAACACTCCTATTGTCCTCCTCCA
GGCCCAAAAAGGGAAGCTTTGTTGCCAAGTTGTCAAAACTCCTTTCTATT
CTTTCCCAAAGCAGAACAGCTCTGTCTCTTTCAAGGCGAGCCAGGCGAGA
CTACTCCCCAGGGAGGTTGTATCTATCCTTGTAGGAGA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATAGAGGACACATACAATCA
AAGCAATACAGAGAGAGCCAATAGTCAACATCAAACTAAATGGCAAGAAA
TTTAAAGCATTTCCACTAAAACCAGGGCAAGACTAGGCTGCTCACTCTCT
CCCTATTTATTCAGTGTAGTACTTGAAGTTCTGGTAAGAGCGCTATGACA
ACTAAAGGAGATCAGGGGATACAAGTTGGAAAGGAAGAAATCAAAGGAAT
GCTATGCATGGATGATATGATAATGTACATAAGTGACCCCCAAAATTCTT
CCAGATAACTTCTATATTTTATAACCCCCTCCCCCACAGTGTCTGGATAC
AAAATTAACTGAAAGAAACTATTAGCCCTATTTAATACAAATGATAAATG
GGTGGAGAAAGAAATTAGAAAAACAACACACTTTATAATAGCTGTGAATA
ATATAAAATGTCCTGGTGTAACCATAAGTGAAAGATCTATATGACAAGAA
TTCATGTCTCTGAAGAAAAAAATTAAAAAAGATATTAGGATATGGGAAGA
TCTCACAAGGTCACAGTCTGATAGGATTACCATAGCAAAAATAGTCATTT
TACAACAAACAATCTACAGATTCAATGCAATGCCCATCAAAATTCAAACT
CAATTTTTACAGACCTTAAAGAGCAACTCTCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_p18.b1 MSMg01no198_p18.b1 CHROMAT_FILE:
MSMg01no198_p18.b1 PHD_FILE: MSMg01no198_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:23 2005
         (317 letters)



>mm_chr11_36033374_36034090
          Length = 717

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggagtctcctcgggagaaagcataggtagaggaaaagcccacgtcctgtctg 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggagtctcctcgggagaaagcacaggtagaggaaaagcccacgtcctgtctg 263

                                                                       
Query: 64  aagatgcatattacacagtcccgaattcaagtttgtgcctatcctgtttcatttggatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagatgcatattacacagtcccgaattcaagtttgtgcctatcctgtttcatttggatca 323

                                                                       
Query: 124 gtttctagaacattctgggcctgaatttctcagagatgagattcctgctcttggagctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttctagaacattctgggcctgaatttctcagagatgagattcctgctcttggagctga 383

                                                                       
Query: 184 agttacactatgttatgttggatatgtgatagttatcctttctttttctttgaaatattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttacactatgttatgttggatatgtgatagttatcctttctttttctttgaaatattc 443

                                                                       
Query: 244 cggcggtgttctccccacccttctctctgaaatggactgaaaaattctgtttggagaagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cggcggtgttctccccacccttctctctgaaatggactgaaaaattctgtttggagaagc 503

                         
Query: 304 ccttttgatacaat 317
           ||||||||||||||
Sbjct: 504 ccttttgatacaat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)