BAC Information

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BAC

Clone NameMSMg01-199A05
Chromosome11 (Build37)
Map Location 61,566,473 - 61,566,752
singlet/doubletsinglet
Overlap genePrpsap2
Upstream geneTop3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik
Downstream geneUlk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199A05.T7 (MSMg01no199_a05.b1)MSMg01-199A05.TJ (MSMg01no199_a05.g1)
ACCAG386113AG386114
length730727
length of high quality
(start - end)
320 (46 - 365)280 (372 - 651)
definitionCHROMAT_FILE: MSMg01no199_a05.b1 PHD_FILE: MSMg01no199_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:26 2005CHROMAT_FILE: MSMg01no199_a05.g1 PHD_FILE: MSMg01no199_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTGGCTGGAAGTTCCTTATTTCCAGGGATTGCTCATAATTATG
ATAAAAAGAAGCTAGAGACATTTAACAAGAAACTTGCCTTTGTTACCATC
GTACTATAGTTATGCATCCAGAATATGGAGAAGCAATTCAGCTAATGAAC
ACATACCAGTTTCTAATAGAGATTGGACTAGCTAAGGATTATTTCCTGAA
GGCTCATGGGTTTTAAGTGCCGTGGCTCTCTGAAGCTTAAGTGAGGATTT
CCTTACAATGAGTAGAATTTCTCTTCTGTCCCTTGTCACAATTAAAAAAA
ACAAAAACAAAAATTCTTTCTTCTTCACCGCCCCCATCCATTTGGGGTTC
ACTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAATACACTGTAG
CTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTTATTACAAGTGGTT
GTGAGCCACCATGTAGTTGCTGAGATTTGAACTCAGGACCTCTGGAAGAG
CAGTTAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCTCTTGGGGTCCA
CTTTTAATTCATACCAATTAACTCCCTTCCGAATAAACTGAAAAGAGCTC
TGCCCAAACGACTATCCCTACCGATAGAACGATTGAATAAATTCATAAAC
AGAAAAAGAAAGTTTGCCTCCCATCCACCT
NCCCCCCGATGAAGTGGTAGGCCTGGNGGCCGCCTGGTTCCGACGGGGGG
NGAACTANAGAAGTTGCAAAAAAACACAGNGCTGCTCTCTGGCTCAGATT
CCACTGTATCTAGAGGTCACCACCTCACCCACCCATGAGAATGGTGGGAT
TCAGTTGTCCTCATTTCTCAAATAAAAAGCACACCAATCTTAAAACTATC
TTCTCCTGTGTGACCTAGTCTTCAGACTCTAATAGGCATACTCAAGAGGC
AGTTATAAAGCACTTACTTTGAGATGGTTTGGATGATAAATACATCTTTT
CCTCTCACAGACTCCTTTTGTAGTTTTCTTGNTTCTAAAGGGAAAAGGAG
GGAAGATATATTTCAAAATGCTAAAACATGCACCAAGTCTGCATTAATTT
CCAAACTTATAGAATACAGAAACCAGGACTCCTACCAAACAGCAGAATGC
ACTGACATGAAGCATGTCACCATTAATCATACTTTAGAATCAAATTTAGG
CTTCTCCCCTCACATTTAAGTAGCGTCTGCTATGACACAGAGCACAGTCT
AGAAATGATGTATTCAGTCATGCAACCAGCACCAACTAAGAACAGAGGCA
TAAATGTAGCATGTTGTTGGATAAAAGAAGACTGGCGACTATCCCTGCTC
TTATTTTTTTGTAACTAGCAACAAGGGACAAATCCAGGATTGAACACTCC
ACGGGGTAGGTCTGCAACATTAACGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_a05.g1 MSMg01no199_a05.g1 CHROMAT_FILE:
MSMg01no199_a05.g1 PHD_FILE: MSMg01no199_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:26 2005
         (280 letters)



>mm_chr11_61566273_61566952
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaacatgcaccaagtctgcattaatttccaaacttatagaatacagaaaccaggactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaacatgcaccaagtctgcattaatttccaaacttatagaatacagaaaccaggactc 260

                                                                       
Query: 61  ctaccaaacagcagaatgcactgacatgaagcatgtcaccattaatcatactttagaatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctaccaaacagcagaatgcactgacatgaagcgtgtcaccattaatcatactttagaatc 320

                                                                       
Query: 121 aaatttaggcttctcccctcacatttaagtagcgtctgctatgacacagagcacagtcta 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct: 321 aaatttaggcttctcccctcacatttaagtagtgtctgctatgacacagagtacagccta 380

                                                                       
Query: 181 gaaatgatgtattcagtcatgcaaccagcaccaactaagaacagaggcataaatgtagca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gaaatgatgtattcagtcatgcaaccagcaccaactaagaacagaggcataaatgtagta 440

                                                   
Query: 241 tgttgttggataaaagaagactggcgactatccctgctct 280
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tgttgttggataaaagaagactggtgactatccctgctct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)