BAC Information

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BAC

Clone NameMSMg01-199J10
Chromosome11 (Build37)
Map Location 44,402,301 - 44,402,636
singlet/doubletsinglet
Overlap genenone
Upstream geneFabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneEbf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199J10.T7 (MSMg01no199_j10.b1)MSMg01-199J10.TJ (MSMg01no199_j10.g1)
ACCAG386468AG386469
length723757
length of high quality
(start - end)
587 (45 - 631)336 (84 - 419)
definitionCHROMAT_FILE: MSMg01no199_j10.b1 PHD_FILE: MSMg01no199_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:12 2005CHROMAT_FILE: MSMg01no199_j10.g1 PHD_FILE: MSMg01no199_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGCAGCACCTGTAGCAGAAGCCATGGAAGAATGCCACTTACTGC
CTTGTTTCCCATGGCTTGTTCAGCCTGCCTTCTTATAGCATCCAGAAAAA
CCAGCCTAGGGGAGGCACCACCCACAGTAAGCAGAGGCCTCCAGTCAAGA
AAACGCACCAGAGTGTTGCCTATAGGCCAATGATATGGAGACATTTTCTT
TATTAAGATTTCTTCTTCCCAGATGACCCTGGCTTGAGTCAAGTTGGCAT
AAAAACTGGCCAGCACAGTGTATAATTAATTCATAGCAATAACAAAAAAA
GAAGATACATACAAACACATTAAAAAAAATATATCAGGGGGCTGGGCTGG
TGAGATGGCTTACCCGCTAAGAGTGCTGACTGCTCTTCCAAAAGTCCTGA
GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAAAT
CTGATGGCCTCTTCTGGAGTGTACTTACATATAATAAATAAATGAATTTT
TAAAAAAAATCAAACTATTAAATGTGGCCATCTTTTTTTTCTCATGATTG
TGGTAGAAGATTTTTTTTTCATTTTTTTATTAGGCATTTTCTTCATTCAC
ATTTCCAATGCTACCCCAAAAGTCCCCCATACCTCCCCACTATAAATGTG
GCCATGTTTTGTTCTTAAACTCC
CTTCTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATAGGAAAACGTTC
TTGCTCATTTACAATCAACCGTTTTGCAGAAAATTTCTTCTGCAAAGAAG
CCCCCATTTCTTTATATCTCTAGCTAGAGGGAAAACATGCTGTTTTGTTG
AACAGGAAGACCCTCCTCTCAGCTTTGCTAAACCCATCGGGCTGGGAGAG
AATACGGGTTTTAAAAAGTCACTTTTATAAAACCAGAAAATCATTGCTGT
ATCACATTTCTTACCTTAGAATGGTGTTTCTTAATGGCATAAAGAAAACA
CAGCATATTTGATGGGAATCCATTGTCTTCCCCCTCTTTAAATTATTTAG
TAACCTGGGGTAGCTAAGAAATTGCCCCTGCTCCAATAATTTGCTATGCT
AATTGTGGCCAGCAAATGAGTAACTATAACCAATTACTCAAGGCTGGAAA
GGGCTGAGCCGATGTCGGTGGTTAAGAGGGCAATTCGGTGGTTCGGACTC
CCAAATCTTCACTCAGAATCTCTCTGAAGACTCAAGAATAATAGCTTTGC
AACCAGAATCGAGGGGTACCATGTTTTCTGATGGTGTCCTGTGGGAATCG
AATGAAAGCCATGTTTTCTGCAGAATCTCCTTCTTGTTGTATCTCACCGG
AATCTCCCCGACTTCTGCTTTCCTCCTATCTTGTTCGCTATACCCTTCAC
CCCGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_j10.g1 MSMg01no199_j10.g1 CHROMAT_FILE:
MSMg01no199_j10.g1 PHD_FILE: MSMg01no199_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:12 2005
         (336 letters)



>mm_chr11_44402101_44402836
          Length = 736

 Score =  650 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagataggaaaacgttcttgctcatttacaatcaaccgttttgcagaaaatttcttctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aagataggaaaacgttcttgctcatttacaatcaaccgttttgcagaaaatttcttctgc 477

                                                                       
Query: 61  aaagaagcccccatttctttatatctctagctagagggaaaacatgctgttttgttgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagaagcccccatttctttatatctctagctagagggaaaacatgctgttttgttgaac 417

                                                                       
Query: 121 aggaagaccctcctctcagctttgctaaacccatcgggctgggagagaatacgggtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aggaagaccctcctctcagctttgctaaacccatcgggctgggagagaatacgggtttta 357

                                                                       
Query: 181 aaaagtcacttttataaaaccagaaaatcattgctgtatcacatttcttaccttagaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaagtcacttttataaaaccagaaaatcattgctgtatcacatttcttaccttagaatg 297

                                                                       
Query: 241 gtgtttcttaatggcataaagaaaacacagcatatttgatgggaatccattgtcttcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtgtttcttaatggcataaagaaaacacagcatatttgatgggaatccattgtcttcccc 237

                                               
Query: 301 ctctttaaattatttagtaacctggggtagctaaga 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctctttaaattatttagtaacctggggtagctaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)