BAC Information

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BAC

Clone NameMSMg01-199L19
Chromosome11 (Build37)
Map Location 93,619,033 - 93,619,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545, LOC100039286, Car10, LOC629636
Downstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199L19.T7 (MSMg01no199_l19.b1)MSMg01-199L19.TJ (MSMg01no199_l19.g1)
ACCAG386559AG386560
length766791
length of high quality
(start - end)
251 (64 - 314)34 (78 - 111)
definitionCHROMAT_FILE: MSMg01no199_l19.b1 PHD_FILE: MSMg01no199_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:24 2005CHROMAT_FILE: MSMg01no199_l19.g1 PHD_FILE: MSMg01no199_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAGCTCCGCGGAATTCCCTGC
TTATTTCTGGAACATGCTCTGCGAATCACTGGCTTGAGCTGTGATAGCTT
AAACCCCCAGAATGCATTTAGAATTTAACTGTGTTCCTTCTGGTGTTTTT
GGGTTTTCCCCCAGTCCACTATTTAAGAATATTCCCCTTCTTTCTTGCCT
GAAGCACGTTGTGGTCTCTGGGAAGTCTACCCATCTCATTTGCAATCTTT
GCTAGGCAGTCTTAGAGAAATAAGATACACAGGCTCTGTGCTGGGCAGAA
TATACACAACTATCTTTTTTGAGTAGTTTTCACCTTCCCGAAAACCTTTC
CTACTTATAATTCCCGCACAAAGAAGCAAGACTACTTCCGGTCTTTTGAT
TGGTGATTCCCCCCCACCATTAAATTCCATCCAGCCAATCACAACCTTTC
TCTGATTTTGTTTACGTCTCAAACTTGCACAAACATTTTTTCATAATTTG
CATACAACATTATAACTGTTTATTTCTTCTATTTCAATCCCCATCTAATC
AATTCTTCACTTTTGCGATCTTCCATTCTTTCTTTTTATTATTCCTATTT
CTTAAATGCCGCTTCTTTTCCTTTTATTCTCATCCATAAATTATACTTAA
TTAATATCTATTATATATTTTCAATAAATATTCACTAGAACAACCTGTCA
ACCTTCACATCTATCTCTAAACTTTCTCCTCTCCTTCTTTCTCTATTTTT
ATTCCTCTCCTCTCTG
CANNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTAACTTACACACATGAGGGGTGGGG
TGGGGGTANNCNNNCNNNCNCCCCCCCCCCCCCCCCCTCTTCTTTTTCCT
CTTTTTCCTCCCCCTTCCTCCCTTTGCTTTTTCCTTTTTTCCTTCTCTTT
TCTTTTTTTCCTTCCTCTTTTCTGTTTTTCCTCCCTTCGCTCCCTCCTTT
TTTTTCTCTCCGGTTTTCTTTTTCCCCCCCCTCCCTCTCCCCTTGTCTGT
GTTGCGCGCCGGGCCTTTTTTTTTTTTGCGGGCGCCCCTGGTTCGTTTCT
TTTTTTTTGTTTCTCCCCCCCCCCCCTCCTTTGTTTGTGCCCGATTGCTG
TTTGATTGTTGGGTCCCCCCCCCCNAATTATTTAACACCCCTTTTCTTCC
TGTTATCCCTTTCCTCGCCTCCACTTTGCCATGGGCTGTTGTTCCTCTCA
TCCTTAGTTTAAGTCTTCCTTTTTTCATTTGCCATTTGCCCGCCCGCTTT
TTTTTTCTCTCTCTTTCCCCCCGCCCTTTTTTGTGCCCCCCCACTTACCG
CCTTTTCCCCCGCCTCCGCCCCTCTTCTCCCACCCCTTTTTCGCCCCTTT
CCCCCCCTTTGTTTTCTCCCTCTCTCCTTTGTACCCCCCTTTTTCCGTCT
TTTTTTTTTTTCCCCACTTCTCCTAACTGCCCTGTATTCGCGCCCGCCGT
TTCCTCTTTTTTCCCCTTATTCTTGTCTTCGCTATTTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_l19.b1 MSMg01no199_l19.b1 CHROMAT_FILE:
MSMg01no199_l19.b1 PHD_FILE: MSMg01no199_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:24 2005
         (251 letters)



>mm_chr11_93618833_93619483
          Length = 651

 Score =  455 bits (235), Expect = e-132
 Identities = 247/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctctgcgaatcactggcttgagctgtgatagcttaaacccccagaatgcatttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctctgcgaatcactggcttgagctgtgatagcttaaacccccagaatgcatttagaa 260

                                                                       
Query: 61  tttaactgtgttccttctggtgtttttgggttttcccccagtccactatttaagaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaactgtgttccttctggtgtttttgggttttcccccagtccactatttaagaatatt 320

                                                                       
Query: 121 ccccttctttcttgcctgaagcacgttgtggtctctgggaagtctacccatctcatttgc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 321 ccccttctttcttgcctgaagcacgctgtggtctctgggaagtctacccgtctcatttgc 380

                                                                       
Query: 181 aatctttgctaggcagtcttagagaaataagatacacaggctctgtgctgggcagaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 381 aatctttgctaggcagtcttagagaaataagatacacaggctctgtgctggccagaatag 440

                      
Query: 241 acacaactatc 251
           |||||||||||
Sbjct: 441 acacaactatc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)