BAC Information

Click to search

BAC

Clone NameMSMg01-199M15
Chromosome11 (Build37)
Map Location 48,964,508 - 48,964,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395
Downstream geneOlfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199M15.T7 (MSMg01no199_m15.b1)MSMg01-199M15.TJ (MSMg01no199_m15.g1)
ACCAG386594AG386595
length717749
length of high quality
(start - end)
313 (49 - 361)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no199_m15.b1 PHD_FILE: MSMg01no199_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:28 2005CHROMAT_FILE: MSMg01no199_m15.g1 PHD_FILE: MSMg01no199_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGAGGATTGGGACCTGCCCGGCGCGGGAGCATTTTGCCTGAG
CAGCAGCAGCAGACATCTTGGTTCCCGGATCCCGCCGAGTGTATTCTGTA
CAGGCAGGTGACCATTTTCCCGGCCAGAGGATAGGGACCTGCCCGGCGAG
GGAGCGCTTTGCCTGAGCATTGGCAGCAGACATCTTAGTTCCGGGACCCT
GCCGAGTGTACCCTGCACAGACATCTTGGTTCCAGGACTCCGCCGAATGT
ATCCTGCACAGCTCCAGAGAATACCAGATGGCAAAAGGCAAACATAAGAA
TCCTACTAACAGATTTCTATACCACTCACCCCCATCAGAACGCAGCACTC
CCACGCCACCTAGTCCTGCCCACCCCAACACAACCGAAAAGCTAGACCCG
GATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGAACTT
TAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAG
TCCTTAAAGAAAAACAGGAAAACACAAACAAACAGGTAGAAGTCCTTATA
GAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCAT
ACTAGACCTAATAAGGGAAGTAGACACAATATAGATAACCCAAAGCGAGG
CAACACTTGAGATAGAA
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGGTGAATCAACTAAG
ACCTCACTGGGAAAAAAACAAAACAAAACAGTCAGTGAATGAATAAGCCA
TGCCCACTGGCAAAAGATGGCATTACACAGGGAAGCGAGGTTTGCAATGC
CAGGAGAAAGGATCATAATTTATGTTTTGGTCTTTTTTCGTCTTTGATGT
AGTACCTGGGATTGGATCTCAGAATCCCTCTGTGCTAGACAAGTGTTGTA
CCACTGTGCTATATTCTTAGCTGGATTAAAATTCCTCTACAATTAATGGG
CTAGTACAACAGGTTGGAATCTGGAAGAATCTCAGATATAAGCATCTTTT
GTTAAAACTTTTTCTTTGCCCACCGGGTCCTACTATACAGTCCAAGCTGG
CCTGCAACTTGCAGCCATCCTGTCTTTGTCTCCTGATAAATTTAAATACT
CTCCTCAGAGATATTTTGCTAATTGATAGAAAAAAAGTGAAGCTAATAAA
AAAAAATAGAAAATGATAAAAAAGAAAAAGGTAACGTTCTCTCAATTGCA
TGTTAGTCAGGTCCTGCTGGAGGCGCATACAGAACTAATCACATGCTACC
AGAGGTGGACTCCAACCCCTTAGACTTGAAAAATACAATGTCTGAAATGC
TGGGTTATGCCTCCAAACCTACTATGCTCAAACAAATACCCTAAGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_m15.g1 MSMg01no199_m15.g1 CHROMAT_FILE:
MSMg01no199_m15.g1 PHD_FILE: MSMg01no199_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:28 2005
         (338 letters)



>mm_chr11_48964479_48965214
          Length = 736

 Score =  607 bits (314), Expect = e-178
 Identities = 332/338 (98%), Gaps = 2/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaaggtgaatcaactaagacctcactgggaaaaaaacaaaacaaaacagtcagtgaat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 365 actaaggtgaatcaactaagacctcactggg-aaaaaacaaaacaaaacagtcagtgaat 307

                                                                       
Query: 61  gaataagccatgcccactggcaaaagatggcattacacagggaagcgaggtttgcaatgc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaataagctatgcccactggcaaaagatggcattacacagggaagcgaggtttgcaatgc 247

                                                                       
Query: 121 caggagaaaggatcataatttatgttttggtcttttttcgtctttgatgtagtacctggg 180
           ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 246 caggagaaaggatca-aatttatgttttggtctttttccatctttgatgtagtacctggg 188

                                                                       
Query: 181 attggatctcagaatccctctgtgctagacaagtgttgtaccactgtgctatattcttag 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 attggatctcggaatccctctgtgctagacaagtgttgtaccactgtgctatattcttag 128

                                                                       
Query: 241 ctggattaaaattcctctacaattaatgggctagtacaacaggttggaatctggaagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctggattaaaattcctctacaattaatgggctagtacaacaggttggaatctggaagaat 68

                                                 
Query: 301 ctcagatataagcatcttttgttaaaactttttctttg 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ctcagatataagcatcttttgttaaaactttttctttg 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 736
Length adjustment: 9
Effective length of query: 329
Effective length of database: 727
Effective search space:   239183
Effective search space used:   239183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)