BAC Information

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BAC

Clone NameMSMg01-203H12
Chromosome11 (Build37)
Map Location 41,739,897 - 41,740,235
singlet/doubletsinglet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203H12.T7 (MSMg01no203_h12.b1)MSMg01-203H12.TJ (MSMg01no203_h12.g1)
ACCAG388224AG388225
length727744
length of high quality
(start - end)
---339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no203_h12.b1 PHD_FILE: MSMg01no203_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:38 2005CHROMAT_FILE: MSMg01no203_h12.g1 PHD_FILE: MSMg01no203_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATGCGTCTGTGATCCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAATTTTGTGCAAGGCAAAAT
GACAACCTTGAATAGATTATTTCCCCCATAAATAAGACATTAAGGCTAAT
ATCTTTAATATATAATACAGAATCCCCAATAGTCATTGAGGAAAGAAACT
TTTCATGTATCTGTATTTGTCAAATTTATAACTTAATTTTAATCCAAGTA
TTTCTCGATAATTCCTTTTGTGTTCTCCAAACTCCAGCTCAATGAATACA
TTAGATGCATCTGTGATTTCTTTTTCTTTGTTCTCCTTTGTATCATCTTC
CTAGATAGAGAAATAGTCTCTCACTCCTTCACTCAATTCAACCTTCTAAC
CATGCAGGAACAAGCCCCCCCCCTCTCTGTCTCTCTCCCTCTCTCTCACA
CACACACACACAGAGACAGAGACACAGAGAGAGAGAGACACAGAGAGAGA
GACAGAGAGAGACTGACAGAGATAACGCGGAGGGTTGAGAAATTTATTTC
CCCCTTTTTATTTCCTTTTTCCCCTTCCCTCTTCCTTTTCTTTAACTTTT
TTCTTTCCTATTTTTTTCCTTTTTCTCCCTTTTTCTCTGTCGCTTACTAT
TATCCTTCATTTATCCCTCTCTTTTTATTTTTCTTTATTTCGCCACGTTC
TTTTTCTTCTTCTCTCGTCTTTTATTTACATCTCTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_h12.g1 MSMg01no203_h12.g1 CHROMAT_FILE:
MSMg01no203_h12.g1 PHD_FILE: MSMg01no203_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:38 2005
         (339 letters)



>mm_chr11_41739697_41740435
          Length = 739

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaattttgtgcaaggcaaaatgacaaccttgaatagattatttcccccataaataag 60
           ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 cataagttttgtgcaaggcaaaatgacaaccttgaatagattatttcccaaataaataag 260

                                                                       
Query: 61  acattaaggctaatatctttaatatataatacagaatccccaatagtcattgaggaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattaaggctaatatctttaatatataatacagaatccccaatagtcattgaggaaaga 320

                                                                       
Query: 121 aacttttcatgtatctgtatttgtcaaatttataacttaattttaatccaagtatttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttttcatgtatctgtatttgtcaaatttataacttaattttaatccaagtatttctc 380

                                                                       
Query: 181 gataattccttttgtgttctccaaactccagctcaatgaatacattagatgcatctgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataattccttttgtgttctccaaactccagctcaatgaatacattagatgcatctgtga 440

                                                                       
Query: 241 tttctttttctttgttctcctttgtatcatcttcctagatagagaaatagtctctcactc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctttaactttgttctcctttgtatcatcttcctagatagagaaatagtctctcactc 500

                                                  
Query: 301 cttcactcaattcaaccttctaaccatgcaggaacaagc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcactcaattcaaccttctaaccatgcaggaacaagc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)