BAC Information

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BAC

Clone NameMSMg01-203H18
Chromosome11 (Build37)
Map Location 27,422,140 - 27,422,385
singlet/doubletsinglet
Overlap geneLOC100042377
Upstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203H18.T7 (MSMg01no203_h18.b1)MSMg01-203H18.TJ (MSMg01no203_h18.g1)
ACCAG388232AG388233
length740743
length of high quality
(start - end)
---239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no203_h18.b1 PHD_FILE: MSMg01no203_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:39 2005CHROMAT_FILE: MSMg01no203_h18.g1 PHD_FILE: MSMg01no203_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGATCATCAAGCATGGAAAAATTTGAATGTCATGTCAAGCTGG
CATCGGCTTCTGGAATACCGAACGGATCTCTCATCTTGGCTCCATCCTTT
GTGCTTGTGAGAATATCCACCACATCCACAGGGGCAACTGGATCAGGACC
CTCATTCTTGCAGCGGCTCACCAATCTCTCCGACACCCAAAGAGGTTCCA
TCTGGTCCTGTGGGAACACACAAACAGACCCTCTCGCCCACATCAAGACC
TGATCCGGGCGATCCCCAGTGGAGATGGACGCAGTACCTCGTGGTGATGA
GACCATAACCTCAATCACCTGCGTGTTCAACTGGTAAGTCAATATGAAAG
GCAAGTTTTCACTAGCCCCCCCTCTGTTGTACAATGATTTCCGCGCCCTT
ATATCAATCTGAATCACCTGCTTACACAGCTGCCCTGGATATCCTGTCTG
CTGATGAGCAAATCGACCTTGATCTAGCATTATATCTCTATCCCATGCAA
ATTCAGCTTGATCAGTGCATATAGGACATCCCACGCAGGATAATCTATAC
TCTTTCCAGACCTCCGGACAGAAAGTCTGCCCATACATGGCTGACGAAGA
TGCATATAGAGATTACAGCATAGACTAATTCACCTTCCTCCTCCACCTCA
GCTCTGCTGTACTGGACTTACTGCCACCCTGGAAACGCTG
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTACTTTTTTTCTTTCAATGT
ATAAAGCACATAACAAATGGTTTTCCATTCATTTGTTAATACATTTCATA
CATTAATTTTTAAAAATGTATCTACATCTTTTTATTTCCATAAATACAAA
AATATTTATATTATTTCCTTTAGTCATTCTTTAAAAGTATTGCTTACTCA
CATGTCTGGTGAACAGCTTTTTGGTGTGTACATGTCTGAACATAAATGAT
TTCCTAGCTGAAGACTTGCAATTAAACATGAGAAATGAATTAGATATATA
ACAAACTTAATAATATTTTAAAACGACCACTATAAATGAAGCTAATATGT
TAATTATCAGGAATGAACGACAGGAGTGAAGATAAAGCCAGTAAAACAAT
GTGTATATAACCTTAATTAGCATGCAAGTTCTTCATGGATTGAGTAAACT
ATGACTCTGAAGACATCAGAAGAGTGTGGACAAGCTATTCAATACAGTGG
GAAGAAAACAAACAATTATGACTGATTGTCCTGAAGTTACAGGTGAGAGA
CCAGATCTTTTGGTTTCAGACACAATCTTAGAGAACCTGACCTAAGGTTC
AACAAACAGGTCAATACAGAGCACCAGTTTCCAGGTTTCCCTCTAACAAG
ACCTACGTTTAGCACCAGTTTCCAGGTTATTTCCCAACAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_h18.g1 MSMg01no203_h18.g1 CHROMAT_FILE:
MSMg01no203_h18.g1 PHD_FILE: MSMg01no203_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:39 2005
         (239 letters)



>mm_chr11_27421948_27422588
          Length = 641

 Score =  406 bits (210), Expect = e-118
 Identities = 233/246 (94%), Gaps = 10/246 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgttaatacatttcatacattaatttttaaaaatgtatctacatctttttatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catttgttaatacatttcatacattaatttttaaaaatgtatctacatctttttatttcc 252

                                                                       
Query: 61  ataaatacaaaaatatttatattatttcctttagtcattctttaa--------aagtatt 112
           |||||||||||||||||||||||||||||||||||||||||||||        |||||||
Sbjct: 253 ataaatacaaaaatatttatattatttcctttagtcattctttaattctttaaaagtatt 312

                                                                       
Query: 113 gcttactcacatgtctggtgaacagctttttggtgtgtacatgtctgaacataaatgatt 172
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 313 gcttactcacatgtctggtgaacagccctttggtgtgtacatgtctgaacataaatgatt 372

                                                                       
Query: 173 tcctagctgaagac--ttgcaattaaacatgagaaatgaattagatatataacaaactta 230
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 373 tcctagctgaagacatttgcaattaaacatgagaaatgaattagatatataacaaattta 432

                 
Query: 231 ataata 236
           ||||||
Sbjct: 433 ataata 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 641
Length adjustment: 9
Effective length of query: 230
Effective length of database: 632
Effective search space:   145360
Effective search space used:   145360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)