MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-204J11
Chromosome	11 (Build37)
Map Location	81,787,124 - 81,950,746
singlet/doublet	doublet
Overlap gene	Ccl2, Ccl7, Ccl11, Ccl12, Ccl8
Upstream gene	Accn1, 1700071K01Rik, 5530401A14Rik
Downstream gene	Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Accn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1700071K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5530401A14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20306 MGI:99512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20292 MGI:103576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20293 MGI:108224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20307 MGI:101878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20290 MGI:98258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem132e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270893 MGI:2685490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cct6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12467 MGI:1329013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66983 MGI:1914233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lig3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16882 MGI:109152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rffl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67338 MGI:1914588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rad51l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19364 MGI:1261809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fndc8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78919 MGI:1926169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nle1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217011 MGI:2429770
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Unc45b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217012 MGI:2443377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slfn5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327978 MGI:1329004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Set8-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435270
definition	note : SET domain-containing protein 8 pseudogene pseudo : _no_value

name	Slfn9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237886 MGI:2445121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slfn8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:276950 MGI:2672859
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668706 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668706
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 668 ESTs, 9 Proteins

name	Slfn10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237887 MGI:3512288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slfn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20556 MGI:1313258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slfn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20555 MGI:1313259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074519 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_001034013.2

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074520 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_007384.2

name	1700071K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385139 GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700071K01 gene transcript_id : NM_001033765.2

name	5530401A14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390239 GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5530401A14 gene transcript_id : XM_484055.3

name	Ccl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803162 GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 2 transcript_id : NM_011333.3

name	Ccl7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476054 GeneID:20306 MGI:99512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 7 transcript_id : NM_013654.2

name	Ccl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802451 GeneID:20292 MGI:103576
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small chemokine (C-C motif) ligand 11 transcript_id : NM_011330.2

name	Ccl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226205 GeneID:20293 MGI:108224
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 12 transcript_id : NM_011331.2

name	Ccl8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803310 GeneID:20307 MGI:101878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 8 transcript_id : NM_021443.2

name	Ccl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387472 GeneID:20290 MGI:98258
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 1 transcript_id : NM_011329.2

name	Tmem132e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254490 GeneID:270893 MGI:2685490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 132E transcript_id : NM_023438.2

name	Cct6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753325 GeneID:12467 MGI:1329013
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperonin subunit 6b (zeta) transcript_id : NM_009839.1

name	Ccdc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360645 GeneID:66983 MGI:1914233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 16 transcript_id : NM_025884.4

name	Lig3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061469 GeneID:16882 MGI:109152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ligase III, DNA, ATP-dependent transcript_id : NM_010716.2

name	Rffl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922699 GeneID:67338 MGI:1914588
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and FYVE like domain containing protein transcript_id : NM_001007465.2

name	Rffl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16975487 GeneID:67338 MGI:1914588
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and FYVE like domain containing protein transcript_id : NM_026097.1

name	Rad51l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127139188 GeneID:19364 MGI:1261809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD51-like 3 (S. cerevisiae) transcript_id : NM_011235.3

name	Fndc8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931163 GeneID:78919 MGI:1926169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibronectin type III domain containing 8 transcript_id : NM_030224.1

name	Nle1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703859 GeneID:217011 MGI:2429770
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : notchless homolog 1 (Drosophila) transcript_id : NM_145431.1

name	Unc45b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607168 GeneID:217012 MGI:2443377
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : unc-45 homolog B (C. elegans) transcript_id : NM_178680.3

name	Slfn5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801697 GeneID:327978 MGI:1329004
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 5 transcript_id : NM_183201.3

name	Slfn9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089295 GeneID:237886 MGI:2445121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 9 transcript_id : NM_172796.2

name	Slfn8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380410 GeneID:276950 MGI:2672859
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 8 transcript_id : NM_181545.3

name	LOC668706 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262009 GeneID:668706
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 668 ESTs, 9 Proteins product : similar to Ribosomal protein L12 transcript_id : XM_001003212.2

name	Slfn10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089303 GeneID:237887 MGI:3512288
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 10 transcript_id : NM_181542.4

name	Slfn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755569 GeneID:20556 MGI:1313258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 2 transcript_id : NM_011408.1

name	Slfn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755567 GeneID:20555 MGI:1313259
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen 1 transcript_id : NM_011407.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77404288 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform b protein_id : NP_001029185.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680622 CCDS:CCDS25137.1 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform a protein_id : NP_031410.1

name	1700071K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702063 GeneID:237880 MGI:3588264
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC237880 protein_id : NP_001028937.1

name	5530401A14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51828598 GeneID:71388 MGI:1918638
definition	codon_start : 1 product : hypothetical protein LOC71388 protein_id : XP_484055.1

name	Ccl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755430 CCDS:CCDS25139.1 GeneID:20296 MGI:98259
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0001664 - G-protein-coupled receptor binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A2; monocyte chemotactic protein; monocyte chemoattractant protein-1 product : chemokine (C-C motif) ligand 2 protein_id : NP_035463.1

name	Ccl7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305463 GeneID:20306 MGI:99512
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A7; RANTES/sis homolog product : chemokine (C-C motif) ligand 7 protein_id : NP_038682.1

name	Ccl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755418 GeneID:20292 MGI:103576
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A11 product : small chemokine (C-C motif) ligand 11 protein_id : NP_035460.1

name	Ccl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226206 GeneID:20293 MGI:108224
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : putative; small inducible cytokine A12 (MGD\|MGI:108224) product : chemokine (C-C motif) ligand 12 protein_id : NP_035461.2

name	Ccl8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946818 GeneID:20307 MGI:101878
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A8; monocyte chemoattractant protein-2 product : chemokine (C-C motif) ligand 8 protein_id : NP_067418.1

name	Ccl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755424 GeneID:20290 MGI:98258
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A1; CCR8 ligand product : chemokine (C-C motif) ligand 1 protein_id : NP_035459.1

name	Tmem132e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254491 CCDS:CCDS25144.1 GeneID:270893 MGI:2685490
definition	codon_start : 1 product : transmembrane protein 132E protein_id : NP_075927.2

name	Cct6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753326 CCDS:CCDS25145.1 GeneID:12467 MGI:1329013
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation function : a testis-specific subunit of the chaperonin containing TCP-1 (CCT); CCT is a molecular chaperone which assists the folding of proteins in eukaryotic cytosol product : chaperonin subunit 6b (zeta) protein_id : NP_033969.1

name	Ccdc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560213 CCDS:CCDS25146.1 GeneID:66983 MGI:1914233
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_process : GO:0001832 - blastocyst growth [Evidence IMP]; GO:0007049 - cell cycle [Evidence IMP]; GO:0051301 - cell division [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 16 protein_id : NP_080160.2

name	Lig3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061470 CCDS:CCDS25147.1 GeneID:16882 MGI:109152
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : ligase III, DNA, ATP-dependent protein_id : NP_034846.2

name	Rffl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16975488 CCDS:CCDS25149.1 GeneID:67338 MGI:1914588
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; fring; rififylin product : fring isoform 2 protein_id : NP_080373.1

name	Rffl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925636 CCDS:CCDS25148.1 GeneID:67338 MGI:1914588
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; fring; rififylin product : fring isoform 1 protein_id : NP_001007466.1

name	Rad51l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755278 GeneID:19364 MGI:1261809
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006284 - base-excision repair [Evidence IEA]; GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : TRAD/RAD51L3 product : RAD51-like 3 protein_id : NP_035365.1

name	Fndc8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931164 CCDS:CCDS25151.1 GeneID:78919 MGI:1926169
definition	codon_start : 1 product : fibronectin type III domain containing 8 protein_id : NP_084500.1

name	Nle1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703860 CCDS:CCDS25152.1 GeneID:217011 MGI:2429770
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0001826 - inner cell mass cell differentiation [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IDA] codon_start : 1 exception : mismatches in translation note : novel WD40 repeat containing protein product : Notchless gene homolog protein_id : NP_663406.1

name	Unc45b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607169 GeneID:217012 MGI:2443377
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0007519 - striated muscle development [Evidence IEA] codon_start : 1 exception : mismatches in translation note : striated muscle UNC45 product : cardiomyopathy associated 4 protein_id : NP_848795.2

name	Slfn5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254398 CCDS:CCDS25153.1 GeneID:327978 MGI:1329004
definition	codon_start : 1 exception : mismatches in translation note : expressesd sequence AI956840 product : schlafen 5 protein_id : NP_899024.2

name	Slfn9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089296 CCDS:CCDS25154.1 GeneID:237886 MGI:2445121
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : schlafen 9 protein_id : NP_766384.2

name	Slfn8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559803 CCDS:CCDS25155.1 GeneID:276950 MGI:2672859
definition	codon_start : 1 exception : mismatches in translation product : schlafen 8 protein_id : NP_853523.1

name	LOC668706 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94390243 GeneID:668706
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003212.1

name	Slfn10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089304 GeneID:237887 MGI:3512288
definition	codon_start : 1 product : schlafen 10 protein_id : NP_853520.3

name	Slfn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755570 CCDS:CCDS25156.1 GeneID:20556 MGI:1313258
definition	GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IDA] codon_start : 1 product : schlafen 2 protein_id : NP_035538.1

name	Slfn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755568 CCDS:CCDS25157.1 GeneID:20555 MGI:1313259
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_process : GO:0007050 - cell cycle arrest [Evidence IDA]; GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IDA]; GO:0008285 - negative regulation of cell proliferation [Evidence IDA] codon_start : 1 product : schlafen 1 protein_id : NP_035537.1

clone name	MSMg01-519H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419F24
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-215P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303B06
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-204J11.T7 (MSMg01no204_j11.b1)	MSMg01-204J11.TJ (MSMg01no204_j11.g1)
ACC	AG388905	AG388906
length	854	764
length of high quality (start - end)	165 (103 - 267)	242 (77 - 318)
definition	CHROMAT_FILE: MSMg01no204_j11.b1 PHD_FILE: MSMg01no204_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:11 2005	CHROMAT_FILE: MSMg01no204_j11.g1 PHD_FILE: MSMg01no204_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:11 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(81,950,585 - 81,950,746)	(81,787,124 - 81,787,365)
sequence	CTTCCTTTGTTTANCCCCCNNCCNCCNCCNACACACNCCCCCAAAAANNN NNNNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXCGCGGAATTCTGTCACCACCACACTCAACCTCGCCCCAGCAGCTCTCT AAACTGTGGAGGAAGAAGCCATGCCCCTGCATGGGGATGTTATATTATAA AAGCTGGCAAACTCACATGCAAATTCAAGGAGATACCTTATTGAAACAGG TTTATTCCAGACTTTAAAAGAAGACATTGAACTGCCCCAAATAATTGAGA AAATCTTTAAAGACTATACTGTACGACTTTTTTTCACCTCATGAATATTA AGCTAACACCACAGAGAAAATACAAGATTTTTTGTAAAATCAAGACTTAT AAATGGATAGAAATATTTTTTTTTTCCCCCCCCCCCCCCTTATTTATTAT AATTACTAACTTTTTAGGTACTGCGACCAAACCCCAAAAAAAAAAATATT TTTTGTCAGCTTTTACTTATTATTCCTATTTAAATTTTTATACATATCTT TACAATTTACCCTTTTTTTCTCTTTATCAATATTACTATATACCCTATCA CTTATCAATCCCTTTTGTAACCTAATATCCCTTATATCCTCCATATCCCT TATTTCCTCATTTTGCCATATATAACACTATTTCCTTATTCCCCACTTAT CCACACAGTACACTCTATCCATATTCCTCCCGCTTTTTCTTCTTTCTTTC CCCCATTTCTCCCTTTTTCTCTCAATTCCCTTTTCTTCCTATTTTATCAT ATTACACTCTTTTATTCTCTTACATTTTCCTTATTTTGCATTTATATATT TTTT	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATCAATAGACACGTGATGA ATTGGCTCCACTCTGCTGTCGACCCTACAGAAGTGGGGACTCGTCCATTC TTAGGGACCTGGGGCCTGTCCTGGGGAGGTAAAGGCTCTTCCAACCATGA CTCTATCCCTTGCTGCTCCCAGAGACTCAGCTGCTGTCACTGAACTGGAA AACGCCTGATGTCAGGCCTTGCACACCGGTTATTTCCAACTTCCTAATCT GTGCACGTGAGTGTAGCTGATTTCTGCGGCTACCGAGGAATTGAAACCAC CGACTGTTTTTTTTTTTTCCCCCCCCCCCCCGCATTAATTGAATGTGTGA ATGGATTTTTTTCCAACCGTTGTCATAAAAAAAAAAAATTTTTGTGGTTG CCACCCTAACCATCGCCTGATATCCTAGAAATATGTGTCGTACCATCACT CTTCTCTACCCAACTATCATCTTATACCTAGATACTCCCATTTAGCACCT TCAAAAAATTCACTTTTTTCAAGCATCACCACACACTAAATCCATTACCC CTTACACAGCACATTATCGCAAATAATTACTTAACCTATATTAGTATTAT TTTGTGTCCCCGTCAAATCCTCTTTCTCCTCCTTTCTCTTTTTTTCTTCA TCTTTTCTTTTTAACTCTCAATTCTATTCTCAAACACAAATTCTCCAAGA CTTTTTGCATTCTA
quality values	Open. Hide. 14 17 16 13 11 11 10 6 6 6 8 8 3 0 3 21 21 21 3 0 0 3 3 0 3 3 0 3 3 0 3 8 8 8 6 3 0 3 12 12 15 10 10 10 10 17 3 0 0 0 0 0 0 0 0 3 7 7 10 13 8 9 9 14 14 16 28 27 39 39 27 22 22 25 21 22 10 10 10 19 19 31 35 35 36 36 36 36 36 33 22 18 11 11 19 26 26 19 19 10 12 12 26 28 47 42 37 39 33 33 41 50 57 50 47 42 42 28 28 37 42 37 47 47 57 57 68 68 68 68 50 50 50 50 47 50 51 68 68 68 68 54 57 57 57 57 59 59 68 68 68 59 59 48 48 43 57 43 43 43 43 43 43 53 42 53 50 50 47 44 37 37 35 35 24 23 16 12 10 10 9 10 14 17 22 28 29 29 28 33 39 48 53 50 50 50 47 47 48 48 47 43 47 34 34 25 30 26 30 18 20 25 36 43 59 54 43 42 37 35 35 39 39 43 42 42 37 36 33 36 28 30 35 32 32 32 36 39 39 40 44 37 39 30 37 36 36 20 24 20 32 32 35 35 43 44 44 35 32 32 32 35 35 26 27 12 11 11 12 12 12 11 18 18 18 18 23 36 24 24 11 11 11 24 25 42 42 42 43 42 42 35 35 35 42 32 43 30 30 24 32 30 47 47 47 46 44 36 18 18 13 19 12 10 9 9 12 12 19 21 15 15 10 10 11 18 25 28 20 20 15 15 13 13 17 21 19 15 17 18 23 18 24 19 23 19 22 16 18 10 10 10 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 10 11 13 10 12 11 11 11 11 11 9 9 10 8 8 8 8 8 8 10 8 8 7 7 8 8 10 12 12 12 12 21 15 13 13 12 10 9 8 10 10 8 13 12 10 8 8 13 13 12 16 18 21 13 18 18 18 16 11 10 10 10 15 17 17 10 10 10 13 15 14 12 11 12 10 8 8 8 8 10 8 11 11 11 11 9 10 8 8 8 10 11 14 12 15 8 8 8 6 6 6 6 6 6 7 7 6 6 7 6 6 6 6 7 9 8 14 11 10 10 10 10 9 10 10 9 9 15 12 12 12 12 15 18 10 10 8 8 8 8 8 8 10 8 9 10 11 11 11 12 12 8 8 8 8 8 8 8 7 7 12 11 13 8 8 8 9 10 10 10 9 9 9 10 10 10 8 8 8 8 8 8 10 10 8 11 8 8 8 8 9 9 9 9 10 10 13 13 13 10 11 8 8 8 8 8 8 10 10 8 8 6 6 8 8 8 10 10 10 10 8 8 6 7 8 10 10 10 10 10 10 10 10 10 8 8 8 8 9 9 11 13 13 15 12 8 8 8 8 8 8 9 9 11 11 8 8 8 8 8 9 19 12 8 8 8 10 13 10 11 11 11 15 8 8 8 8 8 8 8 8 12 15 10 10 8 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 6 6 8 12 12 13 13 8 8 8 8 7 10 10 14 8 8 12 10 10 10 12 12 13 13 8 8 6 6 8 8 6 6 8 8 6 6 6 8 8 8 8 8 8 10 10 13 10 10 8 6 6 6 6 7 9 10 13 13 17 12 10 10 10 10 15 19 24 15 15 15 21 10 13 12 13 8 6 6 6 8 8 9 9 10 12 11 8 8 10 10 8 8 6 6 6 6 8 8 8 13 13 14 20 22 17 24 22 22 22 15 8 8 8 8 8 12 13 10 7 7 8 8 8 10 10 10 10 6 6 8 8 8 13 13 11 11 10 8 8 6 6 8 8 8 6 7 7 13 14 24 14 14 12 13 9 9 9 10 10 10 8 8 8 8 8 8 8 8 8 16 10 10 11 11 12 12 12	Open. Hide. 6 6 8 19 13 8 8 8 8 15 17 28 30 30 30 27 28 37 32 33 39 41 41 50 50 50 50 50 47 41 33 32 20 18 18 20 20 31 22 28 27 27 31 30 47 53 53 53 53 53 50 50 57 53 53 53 53 44 34 22 10 9 9 9 19 22 36 37 39 35 28 28 42 42 50 51 53 68 68 50 50 51 51 50 47 47 47 68 68 68 68 68 68 51 53 53 53 53 47 53 53 53 53 53 57 57 53 53 53 53 53 53 59 59 41 41 18 26 24 10 10 10 10 10 13 18 15 25 27 41 47 48 48 50 53 50 50 50 50 53 53 53 57 50 50 53 53 53 53 57 57 57 68 57 54 54 54 54 54 68 68 68 68 59 59 54 59 54 59 59 68 68 68 68 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 47 47 57 57 57 68 68 68 68 68 68 57 57 57 57 48 57 57 57 57 59 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 54 54 54 59 59 57 57 57 57 57 57 57 48 48 59 57 44 47 44 43 43 47 57 57 48 57 48 48 48 42 40 30 30 30 44 40 43 43 43 43 47 48 40 37 32 37 43 48 48 57 48 48 48 37 37 37 48 59 57 57 57 57 42 40 28 32 23 32 32 39 30 30 16 16 19 25 21 24 23 34 30 23 16 11 12 10 8 8 8 8 8 8 9 8 8 8 8 15 10 12 12 17 11 13 8 11 8 8 8 8 15 22 20 22 12 12 11 15 11 11 9 11 16 12 14 18 18 22 37 41 34 26 19 15 15 14 17 16 20 17 21 22 23 23 23 19 13 11 15 10 10 8 8 8 8 8 8 9 14 17 24 13 13 9 9 9 11 11 11 11 11 12 12 14 23 20 12 12 9 6 3 3 3 6 6 6 7 9 6 6 6 6 8 8 13 15 13 27 26 18 13 11 10 14 25 30 18 10 8 6 6 10 8 13 10 10 10 11 16 12 10 8 8 8 8 8 8 8 8 8 8 8 8 11 12 9 8 10 8 8 8 8 8 6 6 8 8 8 8 8 8 8 6 6 8 8 10 8 8 8 8 8 6 6 6 6 8 10 8 8 8 8 8 8 8 8 10 15 10 10 8 8 6 6 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 8 8 8 8 8 8 8 8 8 8 10 11 11 11 11 8 8 6 6 8 8 9 9 9 9 10 8 8 8 8 8 8 8 10 10 13 11 11 11 11 11 11 11 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 9 10 8 6 6 8 10 8 6 6 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 9 10 8 8 7 6 8 8 8 8 8 8 8 12 10 10 8 8 8 10 10 12 11 8 8 8 8 8 8 8 10 10 9 8 8 6 6 8 8 9 15 12 12 11 15 15 12 11 11 11 8 8 8 12 10 8 11 8 8 8 10 10 8 10 10 10 18 11 11 11 8 6 6 10 10 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 10 6 6 6 6 10 8 8 8 8 8 8 8 8 9 12 10 10 10 10 12 11 11 9 9 9 9 9 9 10 10 10 10 9 10 10 15 10 10 10 10 10 10 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no204_j11.b1 MSMg01no204_j11.b1 CHROMAT_FILE:
MSMg01no204_j11.b1 PHD_FILE: MSMg01no204_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:11 2005
         (165 letters)



>mm_chr11_81950382_81950946
          Length = 565

 Score =  290 bits (150), Expect = 3e-83
 Identities = 159/162 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtcaccaccacactcaacctcgccccagcagctctctaaactgtggaggaag 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaattctgtcaccaccacactcaaactcgccccagcagctctctaaactgtggaggaag 306

                                                                       
Query: 64  aagccatgcccctgcatggggatgttatattataaaagctggcaaactcacatgcaaatt 123
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggccatgcccctgaatggggatgttatattataaaagctggcaaactcacatgcaaatt 246

                                                     
Query: 124 caaggagataccttattgaaacaggtttattccagactttaa 165
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caaggagataccttattgaaacaggtttattccagactttaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no204_j11.g1 MSMg01no204_j11.g1 CHROMAT_FILE:
MSMg01no204_j11.g1 PHD_FILE: MSMg01no204_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:11 2005
         (242 letters)



>mm_chr11_81786924_81787565
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaatcaatagacacgtgatgaattggctccactctgctgtcgaccctacagaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 201 atgaaatcaatagacacgtgatgaattggctccactctgctgtcgaggctacggaagtgg 260

                                                                       
Query: 61  ggactcgtccattcttagggacctggggcctgtcctggggaggtaaaggctcttccaacc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactcgtccattcttatggacctggggcctgtcctggggaggtaaaggctcttccaacc 320

                                                                       
Query: 121 atgactctatcccttgctgctcccagagactcagctgctgtcactgaactggaaaacgcc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgactctatcccttactgctcccagagactcagctgctgtcactgaactggaaaacgcc 380

                                                                       
Query: 181 tgatgtcaggccttgcacaccggttatttccaacttcctaatctgtgcacgtgagtgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtcaggccttgcacaccggttatttccaacttcctaatctgtgcacgtgagtgtag 440

             
Query: 241 ct 242
           ||
Sbjct: 441 ct 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information