BAC Information

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BAC

Clone NameMSMg01-205G01
Chromosome11 (Build37)
Map Location 121,597,282 - 121,597,570
singlet/doubletsinglet
Overlap genenone
Upstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205G01.T7 (MSMg01no205_g01.b1)MSMg01-205G01.TJ (MSMg01no205_g01.g1)
ACCAG389388AG389389
length735725
length of high quality
(start - end)
320 (46 - 365)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no205_g01.b1 PHD_FILE: MSMg01no205_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:14 2005CHROMAT_FILE: MSMg01no205_g01.g1 PHD_FILE: MSMg01no205_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGGAAGTGGGTTCTAATGCCAGTAAAACAAAACAACCTCCCAC
CACCACTACCACAACAACTAAAAACCTGCTAACCAGATGTAGAACAAGCA
GACAAAGAGAAAGAGCTACTACACTGAATGTCCTCTTTACATATAGGTTG
CTACCAGAAGCTGTGGCCTAGAGTAAAGGTACATTTCATTGCCTTAAAAA
AATCCAGGTTGAAGAAGGGATTTCCCAACTCAAAAGCTATTACCAAAAAA
AAAAAAAAAAAAAAAAAAACCTGCACAGCATCCAAAATCTTTCAGTTTTA
GTCAGTTCCACATGTATTTAGTTTGACTACCCACAATTGCCATCACAGCC
AAAACAGAAGAACTGAGAAAGATCTCTCCCCTCACCTCTAGTTGCAGGAA
AAGAAAGCATGGGAATTGTTTGCAAAGCAATGCCTTTCTTCAAAGAAGGG
ATCACTGGTATTTTACTGAGGGAGTCTAGATACACTTGCATATAGGTATT
GCTACTCCCACACATGCTCAGCTAATTCCTCTCCTGAACATGGTCACAAT
GTCAAAGCAGTGATATTTAAGGGTATTCTTAGCTCAAAGTCAGCAGAAAC
ATATGAGACACACACACACACACACACACACATGCACACACTTATATACA
TAAATATGATGGCCAGAAATGCCTCTGTAATGTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGCTTGTAAGTGAGCCCTAC
AGGGATAAGAACTTGGCATCACTGCGTTTAGGTTTGAATATGGGTGATGG
ATTGGATGACGGTCCATGGCTAGCCATCAATATTGATGGAGTAGCTCCTG
AACCTGACACACTGGCCCATAGTCATTTCCAGTAGGAATCTTGGAAATAT
CCTGGGAGGGGACACAAAGCATTTGTGACTTCTGCCCTTCTGTTACATAT
TCTTTTCTTATTACGTCTTACTATAGGGCTTAGGGAAGTGTTGAGATCAG
GGTATGCTCTACTGTGTGTTACTTCATACCATAGAAAACAATGGTTTATC
AAGCTGTGCACTGCCCCACACCAACCCATTTCACAAGCAGACTGACTCTA
TTTTAAGGAAGAAAGATGACTGCAGCACCTGGGGATAACCAGGGAACTGC
ATAATCCCTCAGACGTCATCCATCCTGCACTGGCTAAATATGACGTGTTC
CTGGGAATACAAAGAGGACCATCTTATAAGCTTATTTGGAAGATTTTAGA
CCCATGGATGCATTTGAATCATATTGTGCAAATCAAGCCCCCTAAGGTTG
TTGTTACCTACCCTTGTAAAAGAATAACATTCCTCTCCCCCCGAACCTAT
GAAGGCAATTAGGTCCCTTTACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_g01.g1 MSMg01no205_g01.g1 CHROMAT_FILE:
MSMg01no205_g01.g1 PHD_FILE: MSMg01no205_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:14 2005
         (289 letters)



>mm_chr11_121597082_121597770
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagcttgtaagtgagccctacagggataagaacttggcatcactgcgtttaggtttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 201 cttcagcttgtaagtgagccctacagggataagaacttggcatcactgtgtctaggtttg 260

                                                                       
Query: 61  aatatgggtgatggattggatgacggtccatggctagccatcaatattgatggagtagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgggtgatggattggatgacggtccatggctagccatcaatattgatggagtagct 320

                                                                       
Query: 121 cctgaacctgacacactggcccatagtcatttccagtaggaatcttggaaatatcctggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cctgaacctgacacactggcccatagtcatttccagtaggaatcttggaaatatcctgag 380

                                                                       
Query: 181 aggggacacaaagcatttgtgacttctgcccttctgttacatattcttttcttattacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggacacaaagcatttgtgacttctgcccttctgttacatattcttttcttattacgt 440

                                                            
Query: 241 cttactatagggcttagggaagtgttgagatcagggtatgctctactgt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttactatagggcttagggaagtgttgagatcagggtatgctctactgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)