BAC Information

Click to search

BAC

Clone NameMSMg01-205M22
Chromosome11 (Build37)
Map Location 72,071,834 - 72,072,417
singlet/doubletsinglet
Overlap geneSlc13a5
Upstream geneNlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik
Downstream geneFbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205M22.T7 (MSMg01no205_m22.b1)MSMg01-205M22.TJ (MSMg01no205_m22.g1)
ACCAG389660AG389661
length750754
length of high quality
(start - end)
302 (73 - 374)585 (76 - 660)
definitionCHROMAT_FILE: MSMg01no205_m22.b1 PHD_FILE: MSMg01no205_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:46 2005CHROMAT_FILE: MSMg01no205_m22.g1 PHD_FILE: MSMg01no205_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATACCAGGATGGCCTTGAACTTCCAGAAATCTGCCTGC
CTCTGCCTCCCATTGATGGCATTACCGGCACGGGACACCACACCTAGCTG
TCTTTTTTTTTTTTTAAGTACCACTCATGTTTATTAATAAAACTAAAAGA
TCTTTTTGAGTTTTGTTTGTTTGGGACAAGGTCTCACTATGTATACTAAA
TCATTGGCCTTAAACTCAGAAATCTGTCTGCCTTTGTCTTCTGAGTCCTG
GGATTAAAGGTGTGTGCCACTATGCCTGCCTTTATTTTTTTTTTATTACA
TGTCTTTCTTGTGTGTGTGTTTGCATGTCCGGCGTGTGGCACATGAGTGT
CATAGCATGCATGCGCCCCCCCCAGGACAGCTTGTGGCAGTTGGTTTTCT
CCTACCATCTGGATCCAGGGGACCAAGCATGGTCAGGCTTGACAGTAAGC
ATCCCTATCCACTGAACCATCTCAATGGCCCTTTGCTTGTTTGTTTTGAG
ACAGGGTTTTATGTAGCCCAGGCTGCCCGCAGACTCCTCACGTAGCTGAG
GGAGGAATATGGCCTTGAACTTCTAATTCTCCTACCCTCAGTACCTCAGT
GCTGGGATCATAGGCAAGCATCACCATCCCTGGCTCAATTAAAAGTTTAA
TATCACGATGCGAGTGACAGGGTTGAAGAGATGGCTCAGTGGCTAACATA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCCTCCATGATCTTTCAAGCC
CACCCAACACAAGGCAAAGCTCAGACAAGGGGATCCTCACAGCCTACATC
CTCTTTCAGTCAAAGCTGGGCACTTCTAGACTATGCTTAGAGTGCACTTG
AGGCCTCCAGTCAGTGGGATTATGCGATGGAAACTGCATAGCAATTAGTG
GCCCAACCCCACCTGCCTGTGCCATCTGCAGACTCTGAAGATCACAGGAT
CCTGGCCATTATCAGCCAATGTCAGTGAGCTGGTAGGGGATCTTTTAAAA
ATGTCTGTTTTCTGTGAATTCAGCCCACTGGATTTGCCAGTGACTGCGCT
GCTGCCATGTTAGCTCACACCCCAGTCCACCCTCCCTGCCTGAGCGAAAA
GCCCCAAGCCACTGAGAGAAGTTGGGCTTGCCCTGTGTTAGAAAGCCATG
TTGTCCATGAGCTCTAGTGCATCAGGTCTCCATTCCTGGGGAAGACTCTT
AGTGGGTGCAGGGATGCTGGGACATAGAGACTATGTGGCTTCATCCTAGA
CTGATGGCTCCAGGCCAAGACAGGNGGAAAAGAGAGCTGAGTAAGCACCT
CCAGCCCCAGAAACCCATGGTGATGTCTCCTGAAGGCAAAGTCATGACTC
ACTCCTGCATCTGGCCCACGAGCATCCCGTTGGTGTCCGTCCCGGACTAG
GTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_m22.g1 MSMg01no205_m22.g1 CHROMAT_FILE:
MSMg01no205_m22.g1 PHD_FILE: MSMg01no205_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:46 2005
         (585 letters)



>mm_chr11_72071634_72072617
          Length = 984

 Score = 1087 bits (562), Expect = 0.0
 Identities = 579/585 (98%), Gaps = 1/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttcctccatgatctttcaagcccacccaacacaaggcaaagctcagacaaggggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttcctccatgatctttcaagcccacccaacacaaggcaaagctcagacaaggggatc 260

                                                                       
Query: 61  ctcacagcctacatcctctttcagtcaaagctgggcacttctagactatgcttagagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacagcctacatcctctttcagtcaaagctgggcacttctagactatgcttagagtgc 320

                                                                       
Query: 121 acttgaggcctccagtcagtgggattatgcgatggaaactgcatagcaattagtggccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgaggcctccagtcagtgggattatgcgatggaaactgcatagcaattagtggccca 380

                                                                       
Query: 181 accccacctgcctgtgccatctgcagactctgaagatcacaggatcctggccattatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accccacctgcctgtgccatctgcagactctgaagatcacaggatcctggccattatcag 440

                                                                       
Query: 241 ccaatgtcagtgagctggtaggggatcttttaaaaatgtctgttttctgtgaattcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatgtcagtgagctggtaggggatcttttaaaaatgtctgttttctgtgaattcagcc 500

                                                                       
Query: 301 cactggatttgccagtgactgcgctgctgccatgttagctcacaccccagtccaccctcc 360
            ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 501 -actggatttgccagtgactgcgctgctgccatgttagctcagagtccagtccaccctcc 559

                                                                       
Query: 361 ctgcctgagcgaaaagccccaagccactgagagaagttgggcttgccctgtgttagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgcctgagcgaaaagccccaagccactgagagaagttgggcttgccctgtgttagaaag 619

                                                                       
Query: 421 ccatgttgtccatgagctctagtgcatcaggtctccattcctggggaagactcttagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatgttgtccatgagctctagtgcatcaggtctccattcctggggaagactcttagtgg 679

                                                                       
Query: 481 gtgcagggatgctgggacatagagactatgtggcttcatcctagactgatggctccaggc 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 gtgcagggatgctgggacatagagactatgtgggttcatcctagactgatggctccaggc 739

                                                        
Query: 541 caagacaggnggaaaagagagctgagtaagcacctccagccccag 585
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 caagacagggggaaaagagagctgagtaagcacctccagccccag 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)