Query= MSMg01no206_n23.b1 MSMg01no206_n23.b1 CHROMAT_FILE:
MSMg01no206_n23.b1 PHD_FILE: MSMg01no206_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:11 2005
(581 letters)
>mm_chr11_60508273_60509253
Length = 981
Score = 1069 bits (553), Expect = 0.0
Identities = 571/577 (98%), Gaps = 1/577 (0%)
Strand = Plus / Plus
Query: 5 gaattccacttgcctctgcatcccaagactgatcagggtctaaggtgttccactgcaccc 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 206 gaattccacttgcctctgcatcccaagactgatcagggtccaaggtgttccactgcaccc 265
Query: 65 atctagatcctctccctcccctttttcctctccccttccctctccttccctcccctcccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atctagatcctctccctcccctttttcctctccccttccctctccttccctcccctcccc 325
Query: 125 atcctcctcttttcctcaccctcaccccatctctggtacatttttgtttgctatgccctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atcctcctcttttcctcaccctcaccccatctctggtacatttttgtttgctatgccctt 385
Query: 185 aaggttagcctcaaattcctttttttaaaaaaaaaaagatttatttatttaatggattat 244
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 aaggttagcctcaaattccttttttt-taaaaaaaaagatttatttatttaatggattat 444
Query: 245 gtaagtacactgttgccttcttcatacaagagggcatcagatctcattacagatggttgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaagtacactgttgccttcttcatacaagagggcatcagatctcattacagatggttgt 504
Query: 305 gagccaccacatggttgctggcaattaaacccaggaccactgttctcttaacctttgagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagccaccacatggttgctggcaattaaacccaggaccactgttctcttaacctttgagc 564
Query: 365 catctctccagcccagcatcaaattcctgattcaagagaccctcctgcttccacttccta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catctctccagcccagcatcaaattcctgattcaagagaccctcctgcttccacttccta 624
Query: 425 aggacacaggatagaaggcacacaccacatctttttcttaccttttatagaaatgtattc 484
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggacacaggatagaaggcacttaccacatctttttcttaccttttatagaaatgtattc 684
Query: 485 aatttaaagaaagtgctttctagctcacaaatcaaggcacagtccattgtgatggggaag 544
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 aatttaaagaaagtgctttctagctcacaaatcaaggcacagcccattgtgatggggaag 744
Query: 545 acgaggaagtcagagcctgggcagctggttatgtttg 581
|||||||||||||||||||||||||||||||||||||
Sbjct: 745 acgaggaagtcagagcctgggcagctggttatgtttg 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_n23.g1 MSMg01no206_n23.g1 CHROMAT_FILE:
MSMg01no206_n23.g1 PHD_FILE: MSMg01no206_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:11 2005
(524 letters)
>mm_chr11_60536326_60537248
Length = 923
Score = 969 bits (501), Expect = 0.0
Identities = 518/526 (98%), Gaps = 5/526 (0%)
Strand = Plus / Minus
Query: 1 tcagacctggcctccagtttccgaaggagctccccacctggcctgtgct--tctctcaga 58
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 723 tcagacctggcctccagtttccgaaggagctccccacctggcctgagcttctctctcaga 664
Query: 59 gcagaaaatgaggatcccaagttctttccttatactcctaggccattgtagctcgggcca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gcagaaaatgaggatcccaagttctttccttatactcctaggccattgtagctcgggcca 604
Query: 119 acagcctgaagaattccggagtccctgatgacatcttcaagctggatgatctctctgttc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acagcctgaagaattccggagtccctgatgacatcttcaagctggatgatctctctgttc 544
Query: 179 tggtcagtggttacctgcccatctggcccctgtgatgctcattcagtcctcactcatgat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 tggtcagtggttacctgcccatctggcccctgtgatgctcattcagtcctcactc---at 487
Query: 239 agctgcctcaagggccgccatcatcccttagagtggtcaatgctgagcccacatcacttg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agctgcctcaagggccgccatcatcccttagagtggtcaatgctgagcccacatcacttg 427
Query: 299 tacactcagttccctagcccagtccccttttcactcaatctatatccctgaacgttcttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacactcagttccctagcccagtccccttttcactcaatctatatccctgaacgttcttg 367
Query: 359 tcactccatgtccaatgtcctgccagatccctgggtatggcagaggcatggggacggtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcactccatgtccaatgtcctgccagatccctgggtatggcagaggcatggggacggtgt 307
Query: 419 gtgtgtgtggngcaccctggcctgaccttgtccctgctccctaggacttgagccataacc 478
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtgtgtggggggcaccctggcctgaccttgtccctgctccctaggacttgagccataacc 247
Query: 479 agttgacagaatgcccacgggagctggagaatgccaagaacatgct 524
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agttgacagaatgcccacgggagctggagaatgccaagaacatgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space: 469282
Effective search space used: 469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
