BAC Information

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BAC

Clone NameMSMg01-206O05
Chromosome11 (Build37)
Map Location 9,955,291 - 9,955,611
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206O05.T7 (MSMg01no206_o05.b1)MSMg01-206O05.TJ (MSMg01no206_o05.g1)
ACCAG390327AG390328
length727791
length of high quality
(start - end)
325 (45 - 369)---
definitionCHROMAT_FILE: MSMg01no206_o05.b1 PHD_FILE: MSMg01no206_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:12 2005CHROMAT_FILE: MSMg01no206_o05.g1 PHD_FILE: MSMg01no206_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTTTTGTTAAATTAATCTACTTTGTGCTGGAAACTATTCACT
GATTATGCTTATCTGTGAAGTCCAAATGTAATTCTGAAACTGATATAGTG
GGTCTAAAAAAAAGATGTAATGTGACTTTACTGGTTGGTGACATGATACA
ATGCAGGGCACATAATGTTCACAAAATGTCTTCCTATGTTCCCTCTGGCT
GATCCTTTGGAATGTTCCAGCTTATATTTTAAACATATTTGGAAGATATT
CCTTTTATTCCAACTATACATTGGATATCTCTGTAGAAGCAAGGTGGATT
TCAGGTGACGATTCTCCAATGCCACTGTGGAACAGGGATATAGTCCTCAG
GACACTAGCTGTGCGACGAAGGCTGTGCCAATCCTTGAGTAACAAGGACT
GACAATCCTGTGAGGATTTCTATCCAGTTTGAGAACCCCAGTCTCATAAC
AATGGAATAGCTTGTTCAAGGTCATATTAAACAGTCAAAATTAACAGTTT
GGAGACCAAAGTTAGGATCAATTTTACTTTCAAGCCTATCCTTTAGACCT
CACTGCCATTCAAGATTAAATAGCATGTTACTCATCTCCTGATAGCATAC
AACAAGAAACAAGAACTCAATTCAGATCAATAGGAAGACAGCCTAGTCAG
GGACATCCAATGTGTTAGCACTACACT
CCAAAACCCCCTTTTTNTNNNNNCCTTCGGGGCCNCCGAGGGGGGTGAAA
CGAAGAAGTGGGNAGCCGGGNGGNCGCCGGTTCAGGACCGAAGGNGANNN
NNNGNNGTTNCAAAAAAAAGGGGGNNNGAGGAAANNNANGGNAGAGAAGN
ANGGGAAAAAATGTTCCCCAAAAGAAGGGGGGAGGGAAAAGGAAANNNAA
ANAANANAGAGAAGNGAGNNAANAANAGNNAGAAGGGNNAAGAAGAAAAN
AGAAGGGGAAAGNAGAAGAAGGAGAGGAAGAGGAGAAAGAGGAANAATTT
TTTATAGAAGGAGGGATTGAAGGATTGAAAAAGAANTATGGAAATATATG
TGGAGGAAAATTTTTAATGGTGTTAAAGAGAGAAGGGAGGAGAGAGNAAA
ATTTTTTTTTTTCCCCCCCCAGAAGAGGAAGGAAGNGGAAAGAAGGANCC
AGGCTCCCCCAAAAAAAAAAAAAAAAAAAGGGGTCTTTGCCCAGGGTGNA
AAGAACCCAGATGAAATTCAAAAGAGGAAAGGAAACAGAAAAGTGGTAGA
GATAAAAAAGGAGTACCAATCGGTATATTATAAAGAAGGAAGCGACGCAA
ATTAATAGTTAAATGTATGGACTTTGGAAGGGCAAAAAAATAGAGAGAAG
TAAAAAAGAGGGGGGAGGAATTAAATATTAGAGGTGAGGGAGCTGATAAA
GAGGATATTAATTTTTTTTTTTTAAGGAGGAGGAAAAATATGAAAATAAA
AAAGTAAAAAAAAAGGGGAGAAAGTAAGGAATGTTTGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_o05.b1 MSMg01no206_o05.b1 CHROMAT_FILE:
MSMg01no206_o05.b1 PHD_FILE: MSMg01no206_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:12 2005
         (325 letters)



>mm_chr11_9955087_9955811
          Length = 725

 Score =  551 bits (285), Expect = e-161
 Identities = 312/321 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctttttgttaaattaatctactttgtgctggaaactattcactgattatgc 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcttcctttttgttaaattaatctactttgtgttggaaactattcactgattatgc 264

                                                                       
Query: 65  ttatctgtgaagtccaaatgtaattctgaaactgatatagtgggtctaaaaaaaagatgt 124
           |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ttatctgtgaagtggaaatgtaattctgaaactgatatagtgggtctaagaaaaagatgt 324

                                                                       
Query: 125 aatgtgactttactggttggtgacatgatacaatgcagggcacataatgttcacaaaatg 184
           |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 325 aatgtgactttactggttggtgacatgatataatacagggcacacaatgttcacaaaatg 384

                                                                       
Query: 185 tcttcctatgttccctctggctgatcctttggaatgttccagcttatattttaaacatat 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttcctatgttctctctggctgatcctttggaatgttccagcttatattttaaacatat 444

                                                                       
Query: 245 ttggaagatattccttttattccaactatacattggatatctctgtagaagcaaggtgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggaagatattccttttattccaactatacattggatatctctgtagaagcaaggtgga 504

                                
Query: 305 tttcaggtgacgattctccaa 325
           ||||||||||| |||||||||
Sbjct: 505 tttcaggtgacaattctccaa 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)