Query= MSMg01no207_b18.b1 MSMg01no207_b18.b1 CHROMAT_FILE:
MSMg01no207_b18.b1 PHD_FILE: MSMg01no207_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:37 2005
(834 letters)
>mm_chr11_28382651_28383884
Length = 1234
Score = 1516 bits (784), Expect = 0.0
Identities = 814/824 (98%), Gaps = 2/824 (0%)
Strand = Plus / Plus
Query: 12 gaattcctgtactcaaa-gaatcttatccttggaagccaggcagcagcgtacttgagcac 70
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcctgtactcaaaggaatcttatccttggaagccaggcagcagcgtacttgagcac 271
Query: 71 gtgacagcatagctgtggttcgacatcagtgtttctcttctatccaagcattaccattta 130
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtgacagcatagctgtggtttggcatcagtgtttctcttctatccaagcattaccattta 331
Query: 131 gtacagctcaagcatactcctccaaaactcaaggtcagctttgctccaagaggatcaaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtacagctcaagcatactcctccaaaactcaaggtcagctttgctccaagaggatcaaga 391
Query: 191 gagtgggaatgagtgagagagcaaagggttgggtatatctaagttagttcaccaatgatt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtgggaatgagtgagagagcaaagggttgggtatatctaagttagttcaccaatgatt 451
Query: 251 taacccttctactcatgctagcagcctatatctgagtttattctcagttttaaacatatt 310
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 tagcccttctactcatgctagcagcctatatctgagtttattctcagttttaaacata-t 510
Query: 311 ttccatgtttaatcagcaagtatttattcaaataaaatgcttgatatttatccagaaggt 370
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 511 ttccatgtttaatcaacaagtatttattcaaataaaatgcttgatatttatcctgaaggg 570
Query: 371 tgtcatgagttaaataactaagtcaaaacctgtctgcccttcccaagtattttttaagga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtcatgagttaaataactaagtcaaaacctgtctgcccttcccaagtattttttaagga 630
Query: 431 cttcttgtctttaaaattgcacatatgaaagatggactatatgcagatgagtgctggtgc 490
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cttattgtctttaaaattgcacatatgaaagatggactatatgcagatgagtgctggtgc 690
Query: 491 ctgcaaagcccaaagaagaagtcatatattctaagcctagaaattcaagtagctgtaatc 550
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 691 ctgcaaagcccaaagaagaagtcatatattctaagcctagaaattcaggtagctgtaatc 750
Query: 551 cacctgatataggtgctaggaattgagcccaagtcttctgcatgaatactatgtactctc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 cacctgatataggtgctaggaattgagcccaagtcttctgcatgaatactatgtactctc 810
Query: 611 actcaactcttcatcccccaaggctacatcttgcttacctgtccaataagccaagccctt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 actcaactcttcatcccccaaggctacatcttgcttacctgtccaataagccaagccctt 870
Query: 671 caggagctaaagaactgcaccatctctttttgaatagtaatggtccttaaggttactact 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 caggagctaaagaactgcaccatctctttttgaatagtaatggtccttaaggttactact 930
Query: 731 ggtacacacttttgtctggtcaactgttcacctctttgagctctccccagctacataaag 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ggtacacacttttgtctggtcaactgttcacctctttgagctctccccagctacataaag 990
Query: 791 ctaactcctttattctacattgggtcatctgaatgatctcatca 834
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ctaactcctttattctacattgggtcatctgaatgatctcatca 1034
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 834
Length of database: 1234
Length adjustment: 10
Effective length of query: 824
Effective length of database: 1224
Effective search space: 1008576
Effective search space used: 1008576
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no207_b18.g1 MSMg01no207_b18.g1 CHROMAT_FILE:
MSMg01no207_b18.g1 PHD_FILE: MSMg01no207_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:37 2005
(796 letters)
>mm_chr11_28412115_28413310
Length = 1196
Score = 826 bits (427), Expect = 0.0
Identities = 461/477 (96%), Gaps = 8/477 (1%)
Strand = Plus / Minus
Query: 1 atgctaccaggtttgtatgacagatagatccctggctcacgggttccttaagctcctcca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 477 atgctaccaggtttgtatgacagatagatccctggctcacgggttccttaagcttttcca 418
Query: 61 aggtctaggtagcttatttggcagcagaagcagcatatgcagtgacttcatatctcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggtctaggtagcttatttggcagcagaagcagcatatgcagtgacttcatatctcagtc 358
Query: 121 taatgagaggtaaaggattgtttgattgcatgcccaaaatttatgtattatgttattatt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 357 taatgagaggtaaaggattgtttgattgcatgcccaaaatttatgcattatgttattatt 298
Query: 181 acttgtctaacataaacataacgagcatccaatatgttcaaggtatggtgttagacactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acttgtctaacataaacataacgagcatccaatatgttcaaggtatggtgttagacactg 238
Query: 241 gaaagtataaagatttgattgctgtgttctcaatagctttctttctttgtttctttcttt 300
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 237 gaaagtataaagatttgattgctgtattctcaatagctttctttctttctttctttcttt 178
Query: 301 ctttctttgtttctttctttctttctttc--------cttctttcttttttctttctttc 352
|||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 177 ctttctttctttctttctttctttctttctttctttccttctttcttttttctttctttc 118
Query: 353 cttctttctctttctttctttctttctttctttctttctttctttctttctttctttctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cttctttctctttctttctttctttctttctttctttctttctttctttctttctttctt 58
Query: 413 tctttctttctttctttctttctttctttctttctttcttccttccttccttccttc 469
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 57 tctttctttctttctttctttctttctttcttccttccttccttccttccttccttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 223
Number of extensions: 56
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1196
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1186
Effective search space: 932196
Effective search space used: 932196
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
