BAC Information

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BAC

Clone NameMSMg01-208D13
Chromosome11 (Build37)
Map Location 36,344,351 - 36,344,655
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208D13.T7 (MSMg01no208_d13.b1)MSMg01-208D13.TJ (MSMg01no208_d13.g1)
ACCAG391174AG391175
length7151,500
length of high quality
(start - end)
309 (46 - 354)---
definitionCHROMAT_FILE: MSMg01no208_d13.b1 PHD_FILE: MSMg01no208_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:58 2005CHROMAT_FILE: MSMg01no208_d13.g1 PHD_FILE: MSMg01no208_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCAAGAGCACAAGAACAGATCAGAAGCACAGTAAAGTCGAAGA
GAAGAGGGAAGCTGTCAGGTACACCATCCCGTTGCTAATGAAACATGCAT
CACCTTTCCAGGGAGATTTGCACTGGGACCACGTTTTGAAGTAGATTGGC
CTAAACACTTATGAAGTCCCCATGATGTCATGTCCTTTCCTTGGATCAAT
ACCCCTGGCTTCAGTGACATGTCACAAAGGACTAAACAGACAAGATGCTC
TTTGGAGACGAGAATTAAGATTTTATGACAGCACTTGGGATGGAGAAGTG
TCCTAAGGTTTTGTTTTCTTCACCCCCCCCCCAGCAGAGGGAAGCTTTAA
ACATCTGGAGCTGGGTTTCCCCACCCAGAGACTGTGCCTCTGAAGAGGGA
CGAGGTGAGATGAATATTAGATGAGCTGAGAGCAGTGCAGAATGAGAGGC
AGTAAATAGTCTGCGTGTTGCTGTTGAAGCGTACTGTTCTAACTAGCAGA
AAGTAGACACTCCAGCAACCAAAACATTTGCAATAGGCTACGCCAAAGAA
AGTCTTCTGCCTGTCCCAGCATATATTCTACAGAGTGAGTTCTCAGCCCA
GTGGCAGCGCTGCCCACTTCCCACCACACCAGAGACCTTTGATTGTGTCC
AGAGCAGCTGATAAT
ATAATACTTCCTTCTCANACCCCGCAAACACAACATGCCTGTTTGGGTAG
ATGTAGAGATNCGAGTGTCTGTGTTGGGCGGGGACACGATTACATACATA
TGCTTGTATGCTGGGNGTCGTTTTTGCTTTTTTTTAGTAATTTGTGCGGG
CTACAACATTACGCGAATGCAATATTGGTCTCTACACCCACCCCCGACCG
CGGCCCGTGCCCCCGCCGTGTAGTTCAGCTNTTCGCCGAGTATGGGTGGT
TTTATATATATGCCGCACCCTTCACAGATATGGCCACGGTGACGTGAGAT
TACCCCTCGTATCTATATCCGCGAGTGACAGAGCGCACGTGTGCCACGGG
TGACTGCCGGGGGGTATAGTGTGGCTTCCGCACTTATGTGTTTTCCGCTC
CCTGATCACTGCTTGCATTGTAGGATATGAGGCATTTAGCTCGTAATCTA
CCTCGTCGCTCTTCTTGCTTCTCGCCGGCCCGTTTTGATATGTCACCCAT
ATCTTATCTATCTCCGCAACGCATGCCGTCTATCCAATCATTTACCACGC
CTAATGTTCCGGCCGCAATTGTCGCTCTAAGAAGTGATATCCGGCGCTGA
GACAGGAAGAAGAGAGGGGTAAGATGACGCGCGCTAGANTGTGACTGCGG
CCGCCGCGAGTTAATAGTAGAAAGGAATATTGGTGGTTGCGGCCTGGGCT
CTACGCGGTGCGTTGCACGCGATACGACAGTATGTATGACGTCACTACCT
CGCCACAGTGGTATACGGACTTTGATTATGACTATGTTTAACACTACGTG
TTGTACTAAAACACAACGGTATATTATGTGGAGCTCGCACACGATCCCCA
TACGGTTGACGTGATCATAAGAGAGAAGATGCCGCGGCGACACAACAGGT
GCCGTATGGCGAGAGCCATAAATAACGATACAACCGCGACTNCGTCCAGT
CAGCCGTCCACAGTACGCATGAAGTACGTAAACAACTTCACAACTCGACA
CACACAGCCTATTACAACGGCAAGACGTNTGCTAGAGGATGTACCACGTA
ACATATCTCCATCGCGTGTTAATTAACTCCATGTCTACTACTGACGCCGC
TCTAACATAACGACTACACTTTTGATGAGGTCTTGCTGTGTGGGTATTGT
TATTTATACATGACAGATGAGCGCGTTAGTATGTATTATATAACTACACG
ATCACTGCGTGACGAGAGCGAGCGGNGATAGGCGCGCGCTATACGCAGAT
GATGTTNCTCGCGCCGCACAATTATATATACGACGGACGAAATCAACCAC
GAACACAACGATCCGCCATCCTCGCATGTACGACTCCGCTCTCTGATTGC
GCCCGCGACCCTCCTANTATATAGTTCTGTCTCGCTCGGTCTGTGCGCCG
ACCGTAGCTCTGTTNTACGAGCGTATCATATGTCTATATCGCGCACCCAC
GCACAGTCGTCTNTGTCNCACTCTCTGCATGCTTTCTTCATGGCCTAATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_d13.b1 MSMg01no208_d13.b1 CHROMAT_FILE:
MSMg01no208_d13.b1 PHD_FILE: MSMg01no208_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:58 2005
         (309 letters)



>mm_chr11_36344148_36344855
          Length = 708

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacccaagagcacaagaacagatcagaagcacagtaaagtcgaagagaagaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattcacccaagagcacaagaacagatcagaagcacagtaaagtcgaagagaagaggg 449

                                                                       
Query: 64  aagctgtcaggtacaccatcccgttgctaatgaaacatgcatcacctttccagggagatt 123
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagctgtcaggtaga-gatcccgttgctaatgaaacatgcatcacctttccagggagatt 390

                                                                       
Query: 124 tgcactgggaccacgttttgaagtagattggcctaaacacttatgaagtccccatgatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgcactgggaccacgttttgaagtagattggcctaaacacttatgaagtccccatgatgt 330

                                                                       
Query: 184 catgtcctttccttggatcaatacccctggcttcagtgacatgtcacaaaggactaaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catgtcctttccttggatcaatacccctggcttcagtgacatgtcacaaaggactaaaca 270

                                                                       
Query: 244 gacaagatgctctttggagacgagaattaagattttatgacagcacttgggatggagaag 303
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 269 gacaagatgctctttggagacaagaattaagattttaggacagcacttgggatggagaag 210

                 
Query: 304 tgtcct 309
           ||||||
Sbjct: 209 tgtcct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)