Query= MSMg01no208_o21.b1 MSMg01no208_o21.b1 CHROMAT_FILE:
MSMg01no208_o21.b1 PHD_FILE: MSMg01no208_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:54 2005
(326 letters)
>mm_chr11_25724891_25725616
Length = 726
Score = 571 bits (295), Expect = e-167
Identities = 313/319 (98%), Gaps = 1/319 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgtcaacagtggatttgggactggtaccaggaaaggacctacttgttccaaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 489 gaattcactgtcaacagtggatttgggactgataccaggaaaggacctacttgttccaaa 430
Query: 65 tcttcaggcaagcttcacaggtgaccccaaattcctattataggtgacatgattaacctt 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcttcagtcaagcttcacaggtgaccccaaattcctattataggtgacatgattaacctt 370
Query: 125 agctgtttaccattcattgtttaagtgatagcaataaaaagcattgaccacagtgacaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctgtttaccattcattgtttaagtgatagcaataaaaagcattgaccacagtgacaat 310
Query: 185 ctgaagactgcacataaattccttgattatttctttcagccattaatgcttacttttttg 244
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 309 ctgaagactgcacataaattccttgactatttctttcagccattgatgcttacttttttg 250
Query: 245 aagcaaaggacttctgaattgtgttcatctgcattaaagtgtttgaatttttttattaaa 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 249 aagcaaaggacttctgaattgtgttcatttgcattaaagtgtttgaatttttt-attaaa 191
Query: 305 ctaataaaatttattttga 323
|||||||||||||||||||
Sbjct: 190 ctaataaaatttattttga 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_o21.g1 MSMg01no208_o21.g1 CHROMAT_FILE:
MSMg01no208_o21.g1 PHD_FILE: MSMg01no208_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:54 2005
(287 letters)
>mm_chr11_25574510_25575196
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 1 cagtccagaatttccatgatatatcttttataatttccctctaattataatgaaaatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtccagaatttccatgatatatcttttataatttccctctaattataatgaaaatcat 260
Query: 61 ttttcaatgtaattttgcaataaaaatgtttctttatttctcattacataagaacatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaatgtaattttgcaataaaaatgtttctttatttctcattacataagaacatgat 320
Query: 121 ctcattcagttgtggagcaggcttacaatgtgtgctctgtatcttctcgttcttaccatt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctcattcagttgtggagcaggcttacaatgtgtgctctgtatcttctccttcttaccatt 380
Query: 181 taatctcttcatagtctagagatgtcaagaggttcagattaagcttgttaaagatctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatctcttcatagtctagagatgtcaagaggttcagattaagcttgttaaagatctgct 440
Query: 241 tcactcgaactcactgatgattatttatttagcagttttatgt 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactcgaactcactgatgattatttatttagcagttttatgt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
