BAC Information

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BAC

Clone NameMSMg01-208P07
Chromosome11 (Build37)
Map Location 17,753,978 - 17,846,388
singlet/doubletdoublet
Overlap geneEtaa1
Upstream geneEgfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneLOC327871, LOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208P07.T7 (MSMg01no208_p07.b1)MSMg01-208P07.TJ (MSMg01no208_p07.g1)
ACCAG391666AG391667
length710720
length of high quality
(start - end)		312 (45 - 356)189 (126 - 314)
definitionCHROMAT_FILE: MSMg01no208_p07.b1 PHD_FILE: MSMg01no208_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:56 2005CHROMAT_FILE: MSMg01no208_p07.g1 PHD_FILE: MSMg01no208_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:56 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(17,846,081 - 17,846,388)(17,753,978 - 17,754,166)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTTGACGACTGGAATGATCCGCTGTTGGCCAGTGAAATGGTT
GAAGCATGCCATCGGTTAGAGGCTACCTGGGACGCAGGCGAGGTAGATGA
TGATTTGTTCTGTCAGGCTTGTGATGACATTGAAAGACTAACTCAGCAAG
AAAACAAGGGCAGCGAGGAGTCAGAGAGTGTAAGTTATACTTCCACTCGT
GGGTCCAGAAGTAGCTCTACTGCATCTAAACAAGCAAGCCAGTCGGCGCC
ATCTAAACATTGGAATGTTGTCAGCTCTGCAGTGCCATTGTCTTTAGCAA
ATAAATCTCAGATGACTAACCCAGCGACAGTACAGAAAAGAGGCAGATGT
GGAGATGGGCCCAACACTTTGGATGCTACAAATTTGTCTGTGTGTTCTAA
GAATTCAAGTGATAATAAGCGTGGACCAGTACAAGTGAATAGCTCAAAAT
TTGTTCTTGGAGGAAGTTCAAATTTGAATGTAAATTTAGGTCTTATGAGC
ACAAAAATTGCTACTAATATGAAGTTGAGTACTCAGCAGCTATCCCACAA
CAGCTTAGCAGATACAGCTCAGAATGACAACAAAATACTGAAGTTACCAA
AATTCACATTTAAGAAGAAAAATCCTCAGTTAAATCAAAATCATCTAGTG
GGAAGTGTGC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACGTTTTAAAATCACATTTTCCAA
GTATCTTTGTTGAATTATTAGCCGCGGGGCAGAGGACTTGTAAGAGGCTC
AGAACTTCGATATGACTCAGAAAACAATGGTTTTTCCACATAGAGTGCCA
CATGGAGGACCACTTGGGGCTTGGCCCTTCAGCCCTTTCTCTTGCTCAAT
GAAGGTGAACTTGGGTAAGTCCCTGACCTTGCTGACTCCAACTTCTTCTT
TGCAAAGAAGATATTTTTTTTGTTCTCTCCCAGTAGGCTTCTACAAATCA
ATGGCTGTTATTTTTATTGCCACTCACCACCGGCCTGGGTGCCTGTCTGG
TGTCATTATCATTGTCTCACCGAAAATATCACAGGCTCTCTTTACACCTA
TTGAAAGGGATATGAACTGTGTTTACTGTTCCTTTTGAAAGCAGCTTTTA
AAAACAGCAACTTGAAGAATAAACTTAACAGTTCAACAGCTCGTTCAGAA
GAAGAAACAGATTCTAATTAGTGATTGTGTTTCTCTTTTTCCAAACAGTT
CTGTGTACACAAGCTCAAACTTGGACTTTCGGAAAAATAGAGCACTTTAC
TATTATTAGACAAAACCCTTATCCTAATTTTTGGTTAAGAACATTATGTG
CATTTTATTACCCAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_p07.b1 MSMg01no208_p07.b1 CHROMAT_FILE:
MSMg01no208_p07.b1 PHD_FILE: MSMg01no208_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:56 2005
         (312 letters)



>mm_chr11_17845877_17846588
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctttgacgactggaatgatccgctgttggccagtgaaatggttgaagcatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcttcctttgacgactggaatgatccgctgttggccagtgaaatggttgaagcatg 453

                                                                       
Query: 65  ccatcggttagaggctacctgggacgcaggcgaggtagatgatgatttgttctgtcaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccatcggttagaggctacctgggacgcaggcgaggtagatgatgatttgttctgtcaggc 393

                                                                       
Query: 125 ttgtgatgacattgaaagactaactcagcaagaaaacaagggcagcgaggagtcagagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgtgatgacattgaaagactaactcagcaagaaaacaagggcagcgaggagtcagagag 333

                                                                       
Query: 185 tgtaagttatacttccactcgtgggtccagaagtagctctactgcatctaaacaagcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtaagttatacttccactcgtgggtccagaagtagctctactgcatctaaacaagcaag 273

                                                                       
Query: 245 ccagtcggcgccatctaaacattggaatgttgtcagctctgcagtgccattgtctttagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccagtcggcgccatctaaacattggaatgttgtcagctctgcagtgccattgtctttagc 213

                   
Query: 305 aaataaat 312
           ||||||||
Sbjct: 212 aaataaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no208_p07.g1 MSMg01no208_p07.g1 CHROMAT_FILE:
MSMg01no208_p07.g1 PHD_FILE: MSMg01no208_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:56 2005
         (189 letters)



>mm_chr11_17753778_17754366
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggcagaggacttgtaagaggctcagaacttcgatatgactcagaaaacaatggttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggcagaggacttgtaagaggctcagaacttcgatatgactcagaaaacaatggttttt 260

                                                                       
Query: 61  ccacatagagtgccacatggaggaccacttggggcttggcccttcagccctttctcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatagagtgccacatggaggaccacttggggcttggcccttcagccctttctcttgc 320

                                                                       
Query: 121 tcaatgaaggtgaacttgggtaagtccctgaccttgctgactccaacttcttctttgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaatgaaggtgaacttgggtaagtccctgaccttgctgactccaacttcttctttgcaa 380

                    
Query: 181 agaagatat 189
           |||||||||
Sbjct: 381 agaagatat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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