BAC Information

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BAC

Clone NameMSMg01-209E07
Chromosome11 (Build37)
Map Location 47,502,620 - 47,622,568
singlet/doubletdoublet
Overlap geneLOC100039647
Upstream geneTimd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209E07.T7 (MSMg01no209_e07.b1)MSMg01-209E07.TJ (MSMg01no209_e07.g1)
ACCAG391857AG391858
length731740
length of high quality
(start - end)
148 (74 - 221)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no209_e07.b1 PHD_FILE: MSMg01no209_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:21 2005CHROMAT_FILE: MSMg01no209_e07.g1 PHD_FILE: MSMg01no209_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,622,421 - 47,622,568)(47,502,620 - 47,502,904)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTACTACCCACCAGGCCCCATGGTGTAACATACTAGTTAGAC
TGGATACTTTGACAGTCCTTGCCTCTTTTATTAAGTGACAATTCTTCATT
TGCAATTTTAAAAAGCACAGTGCACATGCAACCACTGTGAATGTTGGGTG
GAGGTGTGTGGAATGAGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGTCAAATCACTATCTCCATG
TTGGAACATATGGAAAGGACATTTTAATCCTATATGGGCAACCCAATGGT
GATAAAATTATCAGAGATGACCAGTCATGGTAGTCTAGGTCACAGCCTGT
TGAAGGTGTTGCTTCCTTACAAACTCCAGTTATACCAAAGTGCATTTATT
CAGAGCCTCATTATCTATCTATTAGAGAATGAAAAATACATTCCACTGCC
TCCAACCCCTATGCTATTATCCCCATAATAAGAGTTACTAATTTGCACAG
TAAAATTCCATTTGTTCAAGCCACGCCGCCTCACCTTTTGATTAGAGGGC
AGATTCTGGGAATCCTGGCACTAACGACAAGCTTAACTAGGTATTATGGG
AAAGACTGTAGTGTCATTGAAAGAAGTTGGCAGAAAAAGGCCCAGAGAGC
ACATGTCAATAATTGTCTATTTTATACATTATATGTGATGGTTTTCATTT
TGTTTCCCTTTTGCCATTTGTGCAAATGTAAAACATGGGCTGGCTATGTT
GCTCAGGATGGCCTTCAACACCTGGACTAAATCATCTCTCCTGCTCTGGA
TTCTCAAGTACTCAGACCTTCACTATGCCTAGTTTTCATTTTTAAAGTAC
GTGACATTCAAATTTCAGTGATACTTATTTTTATGGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_e07.b1 MSMg01no209_e07.b1 CHROMAT_FILE:
MSMg01no209_e07.b1 PHD_FILE: MSMg01no209_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:21 2005
         (148 letters)



>mm_chr11_47622221_47622768
          Length = 548

 Score =  271 bits (140), Expect = 2e-77
 Identities = 146/148 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccatggtgtaacatactagttagactggatactttgacagtccttgcctcttttatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 348 ccccatggtgtaacatactagttagactggatactttgacagtccttgtctcttttatta 289

                                                                       
Query: 61  agtgacaattcttcatttgcaattttaaaaagcacagtgcacatgcaaccactgtgaatg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agtggcaattcttcatttgcaattttaaaaagcacagtgcacatgcaaccactgtgaatg 229

                                       
Query: 121 ttgggtggaggtgtgtggaatgagggag 148
           ||||||||||||||||||||||||||||
Sbjct: 228 ttgggtggaggtgtgtggaatgagggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no209_e07.g1 MSMg01no209_e07.g1 CHROMAT_FILE:
MSMg01no209_e07.g1 PHD_FILE: MSMg01no209_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:21 2005
         (286 letters)



>mm_chr11_47502420_47503105
          Length = 686

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcagtcaaatcactatctccatgttggaacatatggaaaggacattttaatcctatat 60
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 201 tgtcagtcaaatcactatctccatgctggaacatatggaaagggcattttaatcctatat 260

                                                                       
Query: 61  gggcaacccaatggtgataaaattatcagagatgaccagtcatggtagtctaggtcacag 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gggcaacccaatggtgataaaattatcagagatgaccagtcatgttagtctaggtcacag 320

                                                                       
Query: 121 cctgttgaaggtgttgcttccttacaaactccagttataccaaagtgcatttattcagag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cctgttgaaggtgttgcttccttacaaactccagttacaccaaagtgcatttattcagag 380

                                                                       
Query: 181 cctcattatctatctattagagaatgaaaaatacattccactgcctccaacccctatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcattatctatctattagagaatgaaaaatacattccactgcctccaacccctatgct 440

                                                        
Query: 241 attatccccataataagagttactaatttgcacagtaaaattcca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatccccataataagagttactaatttgcacagtaaaattcca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)