BAC Information

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BAC

Clone NameMSMg01-209M10
Chromosome11 (Build37)
Map Location 18,249,629 - 18,358,267
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665748, Etaa1, LOC327871, LOC627696, LOC627716
Downstream geneLOC665796, Meis1, LOC635455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209M10.T7 (MSMg01no209_m10.b1)MSMg01-209M10.TJ (MSMg01no209_m10.g1)
ACCAG392172AG392173
length718720
length of high quality
(start - end)
315 (45 - 359)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no209_m10.b1 PHD_FILE: MSMg01no209_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:02 2005CHROMAT_FILE: MSMg01no209_m10.g1 PHD_FILE: MSMg01no209_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,249,629 - 18,249,936)(18,357,987 - 18,358,267)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGATCCTTGAAGGAATTCAGTCTCTTCTTTTTCTAGGAAGCTGA
GCAGTCAGACTGGCCATAAGACACTACTGATAAAAGATGAAGTTACATGG
AAGTAGGTCTTCTCTGATGAGTCCTGGGCAGTGTGACACTATTGGTTGAA
TTATAGAATTTTTGGCTAGTTCTTTTTGCTAATAAACAAACACAGTAAGG
ACTTCTACCGGACATCCTGGTGATACCTAATTTACATAGCAATTCAAGAC
CTGCCCTTATCCTTGGTCATGAATGGATCAAGCAAAGGGATGAGTTTGAA
ACCTGATTGATGTTACCGCACCCCTTGCATAGCTATAGGATGCTCAAGTA
TGGACAAGGAGTCTAGGACATTGGAATAGAAAATACTCAGTGTCATTCAA
GCCACACAGGGATCCTTGGGGACCACAAGACCTACTGCTTTTCTGGGCCA
AATTTCCACACTTTTACAGATTGTGCCCATTTCTAGCTGGGGTTGGGGTA
TCCTAATCCTTGAATAATCAAATTTTTCTATCACTCAGTCCTTGAGATCT
TCATTGCTATCATTAGCTGTTATTAAATGAGTAGATTGAATAGGCATGAT
AGCACTCTGCATAGTTCCCCAAGAACTGGATTCTACCAGAAATCAATGGC
ACCGTTTGTCATTAACAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATTCTTTACTATTATTTAAC
ACTACGGTATAAAATTTGATGACACCTTATATGCGTATGCATATTTATAT
GTTTATATGATACATTCATATACATGTATTGATGATTCTTCTCTATCCCA
TTCATCTTTTTCTGCCTCTTCCTCCCCCAAGTCTAATCTTTTTCTTTGAA
GATAATAGGATGACAGTAGAATGTATTTTCTTTATCAACCTAAACTATTT
TACTAAGCAATGTTTTGCTGTGTGATACTTCTTATTAATCTCACCTAAGC
TTTGATGTTTTTTTTGTGATCTCACCCCCCATACCAGAACTACTAAAGCA
AAAACTTTGCATTACTGGGACTATTGATGCTGATTAGCTGGAGCTCAGAA
ATTAGCGGTGATTAAGAAGAGACCAGCATCGTTGAGGTGACATCTTCTGG
GAAGTGTTTTCTGAAAGCACAAAGAGGCTGTGTTCCAGAGATAGCCAAGG
TTGTACTCCTGCTGCAGTGGGACTTGGTAATGTGTAAGGGTCACCCAGGT
GGTACTGGTTTTGAAGGCATGAAGGGGTCATGCAGAGCAGCTGAGGCTCG
GCACTGTGAGAGGCCATGGAAGGCCATTGGTGAAGGTGCAGCCTCAGTTG
CAATTGAAGGCCCAGGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_m10.b1 MSMg01no209_m10.b1 CHROMAT_FILE:
MSMg01no209_m10.b1 PHD_FILE: MSMg01no209_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:02 2005
         (315 letters)



>mm_chr11_18249425_18250139
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggatccttgaaggaattcagtctcttctttttctaggaagctgagcagtcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggatccttgaaggaattcagtctcttctttttctaggaagctgagcagtcag 264

                                                                       
Query: 65  actggccataagacactactgataaaagatgaagttacatggaagtaggtcttctctgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actggccataagacactactgataaaagatgaagttacatggaagtaggtcttctctgat 324

                                                                       
Query: 125 gagtcctgggcagtgtgacactattggttgaattatagaatttttggctagttctttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtcctgggcagtgtgacactattggttgaattatagaatttttggctagttctttttg 384

                                                                       
Query: 185 ctaataaacaaacacagtaaggacttctaccggacatcctggtgatacctaatttacata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaataaacaaacacagtaaggacttctaccggacatcctggtgatacctaatttacata 444

                                                                       
Query: 245 gcaattcaagacctgcccttatccttggtcatgaatggatcaagcaaagggatgagtttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaattcaagacctgcccttatccttggtcatgaatggatcaagcaaagggatgagtttg 504

                   
Query: 305 aaacctga 312
           ||||||||
Sbjct: 505 aaacctga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_m10.g1 MSMg01no209_m10.g1 CHROMAT_FILE:
MSMg01no209_m10.g1 PHD_FILE: MSMg01no209_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:02 2005
         (295 letters)



>mm_chr11_18357684_18358378
          Length = 695

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggattctttactattatttaacactacggtataaaatttgatgacaccttatatgcgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 584 ctggattctttactattatttaacactacggtataaaatttgatgaaaccttatatgcgt 525

                                                                       
Query: 61  atgcatatttatatgtttatatgatacattcatatacatgtattgatgattcttctctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atgcatatttatatgtttatatgatacattcatatacatgtattgatgattcttctctat 465

                                                                       
Query: 121 cccattcatctttttctgcctcttcctcccccaagtctaatctttttctttgaagataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cccattcatctttttctgcctcttcctcccccaagtctaatctttttctttgaagataat 405

                                                                       
Query: 181 aggatgacagtagaatgtattttctttatcaacctaaactattttactaagcaatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aggatgacagtagaatgtattttctttatcaacctaaactattttactaagcaatgtttt 345

                                                    
Query: 241 gctgtgtgatacttcttattaatctcacctaagctttgatg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gctgtgtgatacttcttattaatctcacctaagctttgatg 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)