BAC Information

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BAC

Clone NameMSMg01-210J18
Chromosome11 (Build37)
Map Location 56,603,084 - 56,734,471
singlet/doubletdoublet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210J18.T7 (MSMg01no210_j18.b1)MSMg01-210J18.TJ (MSMg01no210_j18.g1)
ACCAG392661AG392662
length766789
length of high quality
(start - end)		313 (46 - 358)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no210_j18.b1 PHD_FILE: MSMg01no210_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:13 2005CHROMAT_FILE: MSMg01no210_j18.g1 PHD_FILE: MSMg01no210_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,603,084 - 56,603,393)(56,734,186 - 56,734,471)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAAAAAAATAAATCAAAACACATTTATTCCCTAAGGAAATGCA
GATGATATTACTGTGTGTCAGCTTAGTCACCTATATATGAATTCTTTACA
TATGGCTCTGCATCCTTATACATGGCTACAAGCATCTATTGAAATCCTGT
AGATATGGATCTAGAATGTATTGCAGGGTCACACTAACTCAAAGGATAAG
TAAACAGCCTCAGACTCACAGAACAGAAACTGGGAATGTGCTTTGTAGCC
GAGAGATTTGCTGCTGTCATGAGGTCAGCTGTTGTCTAGTTCCCCCTTTT
AATTTGGCTATGTTTTTGTACCCCCCCCCCCCCAGAACTCCAGAAATAGC
TGCTAGCTGAGGGTTGCCACCACGATCCTGATTGGATTGGGGTCCATGCC
TGGACTAGTCTACTGACAAAGTAGAATGTAAGCTGAGGCTAACGACTGAA
TGGTAAAGGTAGCTGCTGACTGCATGCTCCCTCTACTCTACACCCACAGA
TTTAAGCTCTGCTTTGCTCATGTTTTTATCGCTTACACTTCACAACATTT
GCTTACCCTCTTTGTAATTATTCCTCGATAATCATCTGCTCCTTGCACAT
CTCAACATTCTCTATTTCTTTGAATATTTTAACCTTGCTATCCCTTCTTC
TATTCCTCCTTCTACTATCCGTCCTCTTACCACCTATTATCCCATCCCAT
CACCCTCTTCTCCCAT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACTGCTAAACATGGCTCTTTG
ACATAAACACAAGACACTACCACCAAGTCAGAAATCAGTGTCTTTTCTGT
TCTGGATGGTTTTGTCCCTCAGTTTTCTCTCCTGGTGCTCCAGGAGGGAC
ACACTAGGTCTTCACCTATCTCAGGAGTCTGCATGTCTTGCTCGATGCCC
TGTTGTCCTCGACACTGTGATAAGGTTGAGTGGTAAATATAGCTTTTAAA
AAAAAGAACAAATACGTATTTGATCATATATGTTCAATGGAATGGCAAAG
AAAATAAGTTCCTTTTTTTTTCTCCCCCCCCCCCCACCCTGACAATAAGG
ATAATCCTCAAAAAATGACCCCCCAAAAAGAAAAATGAGAATGAAGAATG
GGAGCTTGATATATAACCAGGATAGGAGAGTGACTATTGTTCTCTACTAG
TTCAGTCTACTCCTCTTGCTGCTTTTTATTTCCTTATTTGTTCCCCTTTA
TCGCTGTAATTTCATATTAGTTCTTCGCATACTATTATCTAAACTACCTA
TAATTCCACTTCTTATATTCTCACACTTTCAAATACCTTATATCCTTTCG
ATTCCTCTTTAATTCACTCTCTTCCCTTTGCTCTTACTTCCAACCACTAC
TACACGTTTTAAACCATTTATTACCCTATCTACATCTTTTATTTTCACTC
TTTTATTTTATATTTATCTCTCTCATTTTTTATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_j18.b1 MSMg01no210_j18.b1 CHROMAT_FILE:
MSMg01no210_j18.b1 PHD_FILE: MSMg01no210_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:13 2005
         (313 letters)



>mm_chr11_56602881_56603593
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaaaaaaataaatcaaaacacatttattccctaaggaaatgcagatgatat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctaaaaaaataaatcaaaacacatttattccctaaggaaatgcagatgatat 263

                                                                       
Query: 64  tactgtgtgtcagcttagtcacctatatatgaattctttacatatggctctgcatcctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactgtgtgtcagcttagtcacctatatatgaattctttacatatggctctgcatcctta 323

                                                                       
Query: 124 tacatggctacaagcatctattgaaatcctgtagatatggatctagaatgtattgcaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacatggctacaagcatctattgaaatcctgtagatatggatctagaatgtattgcaggg 383

                                                                       
Query: 184 tcacactaactcaaaggataagtaaacagcctcagactcacagaacagaaactgggaatg 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcacactaactcaaaggataagtgaacagcctcagactcacagaacagaaactgggaatg 443

                                                                       
Query: 244 tgctttgtagccgagagatttgctgctgtcatgaggtcagctgttgtctagttccccctt 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tgctttgtagccgagagatttgctgctgtcatgagggcagctgttgtctagttccccctt 503

                     
Query: 304 ttaatttggc 313
           ||||||||||
Sbjct: 504 ttaatttggc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no210_j18.g1 MSMg01no210_j18.g1 CHROMAT_FILE:
MSMg01no210_j18.g1 PHD_FILE: MSMg01no210_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:13 2005
         (297 letters)



>mm_chr11_56733986_56734682
          Length = 697

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcactgctaaacatggctctttgacataaacacaagacactaccaccaagtcagaaatc 60
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 486 agcactgctaaacatggctccttgacataaacacaagacactaccgccaagtcagaaatc 427

                                                                       
Query: 61  agtgtcttttctgttctggatggttttgtccctcagttttctctcctggtgctccaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agtgtcttttctgttctggatggttttgtccctcagttttctctcctggtgctccaggag 367

                                                                       
Query: 121 ggacacactaggtcttcacctatctcaggagtctgcatgtcttgctcgatgccctgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggacacactaggtcttcacctatctcaggagtctgcatgtcttgctcgatgccctgttgt 307

                                                                       
Query: 181 cctcgacactgtgataaggttgagtggtaaatatagcttttaaaaaaaagaacaaatacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctcgacactgtgataaggttgagtggtaaatatagcttttaaaaaaaagaacaaatacg 247

                                                         
Query: 241 tatttgatcatatatgttcaatggaatggcaaagaaaataagttcc 286
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 246 tatttgatcaaatatgttcaatggaatggcaaagaaaataagttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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