BAC Information

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BAC

Clone NameMSMg01-211G14
Chromosome11 (Build37)
Map Location 15,424,364 - 15,424,688
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211G14.T7 (MSMg01no211_g14.b1)MSMg01-211G14.TJ (MSMg01no211_g14.g1)
ACCAG393143AG393144
length1,2921,291
length of high quality
(start - end)
362 (42 - 403)325 (70 - 394)
definitionCHROMAT_FILE: MSMg01no211_g14.b1 PHD_FILE: MSMg01no211_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:32 2005CHROMAT_FILE: MSMg01no211_g14.g1 PHD_FILE: MSMg01no211_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGAAATCACAAACAAACAGGTGAAGGAGTTGAACAAAACCATCCATGA
TCTAAAATCTGAAGTAGAAACCATAAAGAAATCCCAAAGGGAGACAACTG
TGGGAATAAAAAACCTAGAAAAGAAATCAGAAGCCACAGATACAAGCATC
ACAACAGAATACAAGAGATAGAAGAGATAATCTCAGGTGCAGAAGATTAC
AAGGAAAACATTGACACAACAATCAGGTAAAATGCCGAATACAAAAAGAT
TCTAACTCAAAACATCCAGGAAATCTAGCACACAACAAGAGCAAACCTAA
GGATAGTAAGTATAGATGAGAATGAAGATGTTGAACTTATATGGCTAGCA
AATTTCTTCAACCAAATTATAGAAGAAAACTTCCCTAACCTGAAGAAAAA
AATGTTTTTTTTCCCCCCCCCCCAGNCTACAGAACTCCCCCTAAAAAAAA
AGAGAGGAGAAATTCCTCTCATCACATAATAATCAAAACACCAAATGTAG
AAAACAAAGCAAGAATATTAACAGCAGTAAGGGGAAAAGGTCAAGTAACG
CATAAAGGTAGACCTATTAAAAATACACCAGACATCTAACCAGAGAATCT
GAAAGCCAGAAGATCCTGGAAGACATCGTACAGACCCTAAGAAAACACAA
ATGCCAGCTCAGCCTACATAGATGGGAAAAGCAAAGTATTCCATGACAAA
AACTAATTTACACAATATCTTTCCCAAGAATCCAGACCTTCAAAGGATAT
TTAAGGGAAAACTCCAACTCCAGGATGGAAACTATGCCTTATAAAAAGCA
AGAAAGTAATCCTTCCACAAACCTAAAAGAACTTACCAACAACCAGAATC
CCAACTTTAACCACAAAAATAAAAGGAAGCAACCATTACTTTTCCCTAAA
ATCTCCTAAAATTAAGGGACCCATTTCCCACTATAAAGCACTAGACTACC
TGACGGCCTACTTAACAGGACCCAACATTTTGCTTGCCCCAGGAACCCAC
TTCTGGAATCAAGACAGAACCTACCTTTAAACTAAAGGTTGGAAAACAAT
TTTTCCAGCAAATGGACCCAATTAATACCTGGAATCCCCCTCTTAATTCC
AATAACGGGACTCTCCCCCTAAGGTTCTCCAAGGGTCTGTGAGCGTCACC
TCTACCCTCTCAGGTAAATCTCTCCCAAAGAATCTCCTCTTCGACACACT
CAATCTCCCTTGATGGGAACTCCATTCTCTAAAAAACTGTAA
NNTTTTGTTGTGAGCTGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAATATGTTGGTTCCTTTGACATGAATCT
AGATATACTTAACATTTTTATTGAGTCCCAATCCCCAAAGTCAGAGAATT
TTACATTTACCTCTGGTTTATTCTCTATGAATTCTGTATCATATTTGACT
GTATAGTGGACTTTTAAAGTTGATTTATTGCCAACATTTAAGTAATGTGT
GGCTATCGTAATTTATTGTTAGAAATTATCATTTAGCAGTTTGCTCCTTG
TTGAAATCCCTTCACTTGACCTCTACAGGAAAACACATGGGGCAAACTGG
AGTGCAATTTCCTGGTAACCTTATTATCCTAAACTATGATCATTTTTTTT
CAGTTTGGNAGGCAGTCAGAACATTCATCAATGATGACTGTTTTTTTTTT
TTTTTCCCCCCCCCCATTTTTTTATTTTCCCTCAAAAAAAAGGGGGGTTG
TTTTNTCTTTCTTAATTACTGGTGCTTAGCTTCAATAGTTCTCTAATATG
AAACTGTACTCTTTAATCTGAAATGAAAAATATTATGGTTTTTGTACCTT
TTAGTTAATAATTACAGGTTAGTATTGATAATGAATCATATGTTTCTGCA
TTTTCTATTGTTAGTTGACTTGTCTTTTTGTTTGCTTGTGAACGTGTGCG
TTCTCGTGTTTGCTTGTTTTTTTTTTTTTATTCTTTTTTTTTCCTTTTTT
TAATCTATTTTTTCTTTTATTTTTTTTTTTTCTACATCTCTCTTTCTTTC
TTTATTTATCTTCCTTTATTTTTTTTCTACTTTTTTTTTTTATCCTTTCT
TCTCTTTCTATTATTTATTTCTTTCTCTTTTCTCTTCTCTTTTTTTCTCT
TTTTTTCTCTCTCTCTATTTCTATTTTTTATCTTATTTTTTTTCTTTTTT
TCCTCCATTTTCCTTATATATTTTTCTTTTTTTTTCTTCTCTCTCTTTTA
TCTCCTACTTTTTTCTCCTTTTTTACTTCTTTTCCTTTCTTTATTCTTAT
TTTTTTTCTTTCTCTCTTTTCTCTTTTCTTTTCTTTTTCTCTTCCTTGAC
TTTTTTTATTTCCCCTTCTTTACTCTTTCTTTTCTTCTCATTCTTTCTCT
CATTTATTCTTTCTATATCTTTCTTTTATGTCTTTTTACGTTCATTCTTA
TTATTTTACTCATTTTTCTCTTTTCTTTTCTCTATTTTCTCCTCATTCCT
TTTCCATCTTATCTTTTCATCTTTTCACCTACTCTATCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_g14.g1 MSMg01no211_g14.g1 CHROMAT_FILE:
MSMg01no211_g14.g1 PHD_FILE: MSMg01no211_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:32 2005
         (325 letters)



>mm_chr11_15424164_15424888
          Length = 725

 Score =  590 bits (305), Expect = e-173
 Identities = 320/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatatgttggttcctttgacatgaatctagatatacttaacatttttattgagtccc 60
           ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 201 attaatatgttggctcctttgagatgaatctagatatacttaacatttttattgagtctc 260

                                                                       
Query: 61  aatccccaaagtcagagaattttacatttacctctggtttattctctatgaattctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccccaaagtcagagaattttacatttacctctggtttattctctatgaattctgtat 320

                                                                       
Query: 121 catatttgactgtatagtggacttttaaagttgatttattgccaacatttaagtaatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatttgactgtatagtggacttttaaagttgatttattgccaacatttaagtaatgtg 380

                                                                       
Query: 181 tggctatcgtaatttattgttagaaattatcatttagcagtttgctccttgttgaaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tggctatcgtaatttattgttagaaattatcatttagcagtttgctcctggttgaaatcc 440

                                                                       
Query: 241 cttcacttgacctctacaggaaaacacatggggcaaactggagtgcaatttcctggtaac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcacttggcctctacaggaaaacacatggggcaaactggagtgcaatttcctggtaac 500

                                    
Query: 301 cttattatcctaaactatgatcatt 325
           |||||||||||||||||||||||||
Sbjct: 501 cttattatcctaaactatgatcatt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)