BAC Information

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BAC

Clone NameMSMg01-211P15
Chromosome11 (Build37)
Map Location 116,853,087 - 116,921,122
singlet/doubletdoublet
Overlap geneLOC100042036
Upstream geneItgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Downstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211P15.T7 (MSMg01no211_p15.b1)MSMg01-211P15.TJ (MSMg01no211_p15.g1)
ACCAG393504AG393505
length728734
length of high quality
(start - end)		318 (46 - 363)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no211_p15.b1 PHD_FILE: MSMg01no211_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:36 2005CHROMAT_FILE: MSMg01no211_p15.g1 PHD_FILE: MSMg01no211_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,920,808 - 116,921,122)(116,853,087 - 116,853,319)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGGAATCCGGCTGCCT
CTGCCTCCCGAGTGCTGGGATTCCAGGCGTGCACCACCACGCCCGGCATA
AAATAAGATTTATTTTATTTTTTTATTATGTGTGTACTCGTCGTGGGTGT
GTGGACTGGGTATCCCTGGAGCTGTAGTATAGGGCTCAGGAGCTGGAACT
GACCTCAGATCTCCTGCATGCTCATAATCACCTCTTCAGCCCTGGGGGCG
GAGTCTCTGCAGAGGTGATCAACTGAAGATGTCTTAGGGTCTCATCCCAT
GACTGGTGTTCTTAGCAAGAAGCCCGCACGTCTGGGGAGGGTGGCTCGGT
CAGGAAAATGCTGGCCTGAGTTCAGTCCCCAGAACCTGTGTAAAAAAGAT
GGCAGCTGTGTAAAAAAGATAGCGGCCCTGCACACTTCTAATCCTGACGG
GATGGGGACGTGGACCCCCAGGCTTGCTGCCAGGCAGCCTAGCCCAACTT
GGAGAGTCCAGACTAGTGAGAGAGGCACACAGATGACTACACATGCGCAC
GAAAGAGAGGAAGTGCGGACGCACGCACACAGGGAAAACGATCTGAAGAG
ACACCAGGAGAAGACAGCTACCTGCAAGCCAAGGAAAGCGGACTCAAAAA
GAACTAGGCCCTGCCCAGACCCCAGCTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTGAACACTGGGCTCCAAC
ACCTTGTCTTCTCCCTCACTTATTACCGAGTTACATCACACCTCCGATGC
CCATTCGTTTTCTTTGATGGAGCCATAATTTTACCTTTATAAAAATGTCC
CTTCAGTAACGTCTTCCAGCCCTCAGGGTGGGGGCTCTCAGAGCCCCTCA
CGATGCAAAGCAAGAATACAGAAAGGGCTTGGAGTTGTACCAAATCACGC
AGCCAAGTAAGGCAGGGCCTGATTTTAAGCCTGGGGTGTCCGGTATGTTG
ACCTTGCCCTGTTGTTGTTTAGACCCCCCACCCCTGACATCTCCCCTTAG
CCGGGCTCAGGCCTACACTGCAAAATAAAAAAAAAAAATACGGGTGAGGA
AAAAAAAAGGGCAGGACAGAGCTGGTATGATGTCACTCTTCCGAAGGAGC
GCTGTTAGGACAGAGTCACATGACCTCAGATAGATAGCCACAGTTGGTCC
AAGAGGTACCAGGTAAGTCCAACGCCTGCCCTCTATTATGTATTTCCCCC
CCGCCCGCGCCCACTTTTTATTTTCACACCGTTATCCCCGCCCTGCCTTT
TTTTTTTTTTTTTATGTGCCAACCCCCCCCTACTGACTATTTGCCTGTTT
TTTTGAGTACTCCGGATTAAGTGTCTCTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_p15.b1 MSMg01no211_p15.b1 CHROMAT_FILE:
MSMg01no211_p15.b1 PHD_FILE: MSMg01no211_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:36 2005
         (318 letters)



>mm_chr11_116920474_116921191
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcgaactcaggaatccggctgcctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggaattcactttgtagaccaggctggcctcgaactcaggaatccggctgcctctgcctcc 590

                                                                       
Query: 64  cgagtgctgggattccaggcgtgcaccaccacgcccggcataaaataagatttattttat 123
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cgagtgctgggattaaaggcgtgcaccaccacgcccggcataaaataagatttattttat 530

                                                                       
Query: 124 ttttttattatgtgtgtactcgtcgtgggtgtgtggactgggtatccctggagctgtagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 529 ttttttattatgtgtgtactcgtcgtgggtgtgtggactgggtatccctagagctgtagt 470

                                                                       
Query: 184 atagggctcaggagctggaactgacctcagatctcctgcatgctcataatcacctcttca 243
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 469 atagggctcatgagctggaactgacctcagatctcctgcatgctcttaatcacctcttca 410

                                                                       
Query: 244 gccctgggggcggagtctctgcagaggtgatcaactgaagatgtcttagggtctcatccc 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gccctgggggcggagtctctacagaggtgatcaactgaagatgtcttagggtctcatccc 350

                          
Query: 304 atgactggtgttctt 318
           |||||||||||||||
Sbjct: 349 atgactggtgttctt 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no211_p15.g1 MSMg01no211_p15.g1 CHROMAT_FILE:
MSMg01no211_p15.g1 PHD_FILE: MSMg01no211_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:37 2005
         (234 letters)



>mm_chr11_116852887_116853520
          Length = 634

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttacatcacacctccgatgcccattcgttttctttgatggagccataattttaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttacatcacacctccgatgcccattcgttttctttgatggagccataattttaccttt 260

                                                                       
Query: 61  ataaaaatgtcccttcagtaacgtcttccagccctcagggtgggggctctcagagcccct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ataaaaatgtcccttcagtaacgtcttccagccctcagggtgagggctctcagagcccct 320

                                                                       
Query: 121 cacgatgcaaagcaagaatacagaaagggcttggagttgtaccaaatcacgcagccaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cacgatgcaaagcaagaatacagaaagggcttggagttgtaccaaatcacgcagccaggt 380

                                                                
Query: 181 aaggcagggcctgattttaagcctggggtgtccggtatgttgaccttgccctg 233
           | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcagggcctgatttgaagcctggggtgtccggtatgttgaccttgccctg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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