BAC Information

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BAC

Clone NameMSMg01-212C11
Chromosome11 (Build37)
Map Location 53,689,524 - 53,689,797
singlet/doubletsinglet
Overlap geneSlc22a5
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459
Downstream geneLOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212C11.T7 (MSMg01no212_c11.b1)MSMg01-212C11.TJ (MSMg01no212_c11.g1)
ACCAG393610AG393611
length698701
length of high quality
(start - end)
110 (132 - 241)274 (76 - 349)
definitionCHROMAT_FILE: MSMg01no212_c11.b1 PHD_FILE: MSMg01no212_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:50 2005CHROMAT_FILE: MSMg01no212_c11.g1 PHD_FILE: MSMg01no212_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAACCGGGGCGNGGAAN
CAAGTCTTGCTGAANCGAAGAGANGGNGGCNCAAAACCATCGGNAAGGAG
ACCCAATTTTTTCCATCAGAAGAGAGCAGAGGGTACTCACATACATAAAA
TAAATAAATAAATCGTAAATTAAAAAAAAAACACAGAACAAAACAAAAGA
ACATTAAAGAACATTATATGGACTAAACAGGTTGGCTTTATATTTTGGAA
ATATACACACACACCACAAACATGCACACACAAATGTAACCACAATTAAA
GACAAAGATGTTTATGTATTTTACAAGAAAGCCGGGACGGCGCCCGGAAT
GGTTTGTCCCCCCACGCACAGGGGAGAATGTTGAATGTGTATTGATTAAA
TCATTCCCCCCCAAAAAATATAAAAATTGACACTCAGTGAGGTGATAGGT
CAGATGAGGAGCAGACACTTCAGCTTCGTAAGTTTGACCTCCAGTATCCT
TCCCCCAATGAGCTAAGCGTACGGTGGCATACGTGTTGTTTTGGGGCTAG
TCGATCCTAACCTGTTATTTCGATTCGATGGCTCATTATCTTCTCGCGCT
CTGTGCGTTGACCTCCCATGAGGGCCTTTGAAAACACGCTTCTTTTTTTT
TTTTTTTGAGCGCCCGCCCGTCTTCTACTTAATCCTTCTGTTTGTACT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGTCTGCATGGAGACTGAGAGGG
TGGGACTACCCTGGTGTTAGCCCTTGTGTTGGGAGACAGCCCCTCAGGGG
AGCCGGTGGCTGCTGCCTCTCCCAGCTGCTTCTCTGTGACCCTCCTTTCC
TCTCCAGGTTTGGTCGCAAGAATGTGCTGTTTTTGACCATGGGCATGCAC
ACTGGCTTCAGCTTCCTGCAGGTCTTCTCTGTGAACTTCGAGATGTTTAC
AGTGCTTTTTGTCCTTGTTGGTATGGGTCAGATCTCCAACTACGTGGCAG
TATTTGTCCATGGTTTCCAATGCGNGTCCCAGTTGAGTACTTGATCCTGT
GTTTCACTTGACTGCACACAAAAAAAAAAGACCCTTGTGACTAGAATTCC
CTAGTAAATAAACCTAGCTTAGCAGATAAGCAATTGAGCCTAACAATGGT
TCTGACTTCTGATGTCCAGTTCTTCTGGCCTCTGAGTTGTGGCCTCTTGG
CCTTATTAGTACTTCAGGCATTAACTAGGATTTTCTTTTTAAAGGCTTGC
ATAGAAAGGGATTATGTAACAAGAAAGAAGGAGGCACACCACGGGGAGAT
GGGTCACGATGGGCAGTCTCCCCAGGAAAGAGGTGCTGAAAAGCATTGTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_c11.g1 MSMg01no212_c11.g1 CHROMAT_FILE:
MSMg01no212_c11.g1 PHD_FILE: MSMg01no212_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:50 2005
         (274 letters)



>mm_chr11_53689324_53689997
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtctgcatggagactgagagggtgggactaccctggtgttagcccttgtgttgggag 60
           |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||
Sbjct: 474 aatgtctgcatggagactgagagggtgggactaccctggtggcagtccttgtgttgggag 415

                                                                       
Query: 61  acagcccctcaggggagccggtggctgctgcctctcccagctgcttctctgtgaccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acagcccctcaggggagccggtggctgctgcctctcccagctgcttctctgtgaccctcc 355

                                                                       
Query: 121 tttcctctccaggtttggtcgcaagaatgtgctgtttttgaccatgggcatgcacactgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 354 tttcctctccaggtttggtcgcaagaatgtgctgtttttgaccatgggcatgcagactgg 295

                                                                       
Query: 181 cttcagcttcctgcaggtcttctctgtgaacttcgagatgtttacagtgctttttgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttcagcttcctgcaggtcttctctgtgaacttcgagatgtttacagtgctttttgtcct 235

                                             
Query: 241 tgttggtatgggtcagatctccaactacgtggca 274
           |||||| |||||||||||||||||||||||||||
Sbjct: 234 tgttggcatgggtcagatctccaactacgtggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)