Query= MSMg01no212_o21.b1 MSMg01no212_o21.b1 CHROMAT_FILE:
MSMg01no212_o21.b1 PHD_FILE: MSMg01no212_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:50 2005
(520 letters)
>mm_chr11_16094535_16095453
Length = 919
Score = 934 bits (483), Expect = 0.0
Identities = 512/523 (97%), Gaps = 4/523 (0%)
Strand = Plus / Plus
Query: 1 aatagaagccctaactaagacacacatacaaatatagaattaaataataaatcaaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagaagccctaactaagacacacatacaaatatagaattaaataataaatcaaactgg 260
Query: 61 tacataatgtgatatcattaattgtcaacttgattcaaccagactgtgctcacatgggaa 120
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tacataatgtggtatcattaattgtcaacttgattcaaccagact-tgctcacatgggaa 319
Query: 121 tctcaatgagggattgtctccatttggttggtcgacacacctctgtggaaaatagtctta 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcaatgagggattgtctctatttggttggtcgacacacctctgtggaaaatagtctta 379
Query: 181 attaaactgtttgcaatgggaagatcaaccatgactaggtagcacaatttcacaggctgg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attaaactgattgcaatgggaagatcaaccatgactaggtagcacaatttcacaggctgg 439
Query: 241 gccaggtattatataaatgtgaagaaagctagatgaacatgaccaaacaagaaaccaagt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 gccaggtattatataaatgtgaagaaagctagatgaacatgagcaaacaagaaaccaagt 499
Query: 301 aatgaaggaagaaagcaagcaagcaaggatcctagtgtttactcct---ctgaccttgac 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 aatgaaggaagaaagcaagcaagcaaggatcctagtgtttactccttctctgaccttgac 559
Query: 358 tatggatgtggtcatttacatacatggtttggtttaccagcaataatgtactgtgacttg 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatggatgtggccatttacatacatggtttggtttaccagcaataatgtactgtgacttg 619
Query: 418 gaattatgagctgaggaaattctttctttctccccttagatgctctttgtcaggggatag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattatgagctgaggaaattctttctttctccccttagatgctctttgtcaggggatag 679
Query: 478 taccacagcaacacaaatgaaactcaggcacattccataacca 520
|||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 680 taccacagcaacacaaatgaaactcaggcatattacataacca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_o21.g1 MSMg01no212_o21.g1 CHROMAT_FILE:
MSMg01no212_o21.g1 PHD_FILE: MSMg01no212_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:50 2005
(283 letters)
>mm_chr11_16171172_16171854
Length = 683
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Minus
Query: 1 caaactagactttcatcatctttcattattggctttacctacttaatcttttctttactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caaactagactttcatcatctttcattattggctttacctacttaatcttttctttactg 424
Query: 61 ttaagggttttgaaactagtttcatttctgtatatttcagctgtatctctaatcatttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttaagggttttgaaactagtttcatttctgtatatttcagctgtatctctaatcatttaa 364
Query: 121 gtttttttcaaagactttgttgaaaccttgaatctaatttagatgagagaaagtctgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtttttttcaaagactttgttgaaaccttgaatctaatttagatgagagaaagtctgtat 304
Query: 181 atgtacagctttcaaagtcttgctgcttattcagatccatttcttaaaattctctgaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atgtacagctttcaaagtcttgctgcttattcagatccatttcttaaaattctctgaatt 244
Query: 241 tttattgctctttacattaaagatataattacaactttgagca 283
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 243 tttattgcactttacattaaagatataattacaactttgagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
