BAC Information

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BAC

Clone NameMSMg01-213A18
Chromosome11 (Build37)
Map Location 52,899,264 - 52,899,575
singlet/doubletsinglet
Overlap geneFstl4
Upstream geneLOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213A18.T7 (MSMg01no213_a18.b1)MSMg01-213A18.TJ (MSMg01no213_a18.g1)
ACCAG394179AG394180
length740781
length of high quality
(start - end)
319 (36 - 354)45 (63 - 107)
definitionCHROMAT_FILE: MSMg01no213_a18.b1 PHD_FILE: MSMg01no213_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:59 2005CHROMAT_FILE: MSMg01no213_a18.g1 PHD_FILE: MSMg01no213_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCC
CTTCAGACTGTGAGCAGGAAGAGGTCTCCGCTCCCTGAAGTTGTTTTCTG
CCCAGTGTTTGGTCACAGCCATGAGAAAAGTAAACAACACATGCCCTGAA
TGGAAGCAATTGGTGACATTTGCTCTCATGTAGCCCTGCATGCCAAGAAG
CTGCTCCAGGCAAGCTCAGGGCTTAACCCTGAGACGACAGCGGTGACATG
GTAAGCCCGTGCCTGTCCCTATATCTACAAATTACCTACTGAGGGAAATG
GTCCAGGGCTCAAGGTGGGGAAGCCCACCCAGGATGGACATCTGCCATGT
GTTCTTTTTTTCTGTGCCCCCCCCCCCCGCAGAGACATCACAACTCAGAA
GCCCGAGTGCCACCCCCCCCTACACAAAAAGAAAAAGAGCTGGCTTCTGA
AAGCCACATCATTAATTTCAGGTAATAACCCAGCATTAATAGCTGATGCT
AAACCCGTCTAGGTGAATTCATTAATCCTTACAACACTCTATGAAGGAGG
AGCTATCGTTATTCCTCTGCTTAGATGAATCCCAGAAACCCCATGCATTT
GATAACTTGCCCTTTTTCCATACCTATAAAGTTACAGGAAAGGGCTTGAA
TCCCTGGAACTCGTAGTTCTAAGACCAAATTCTTGCCCATTCTGTTTCTG
ACTCTCACGTATCCTCAAAAAGTCTTTGTCTCCCCCGCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTGTTGAACCATGTGGAGAATAAGACAGGAAGGCTTT
TGAGTTGAGGCTGCAGATGGGGGTAGGCGGTGATATCCTCTTTAAACCCC
CCAAACCCCACTCATTTCTAAAACACCACCTCACATAAAATTAAACCCTT
TTCTTCCTCCACTAATCTTCTCCATATAATATAATTAATCCTTTACTTCT
CTCCCTCATTAAACCACCCCTCCTCCAAACCCCCACCNTCTCTTCAACTC
ACACCCCCTTTTTTTTTTTTAAAATACTTTCCCCCCCCTCGTGAGAAGCA
TTTTTTTAGTAATTTCCCCCCCCCACACCCCCCCCTTTTTTTATTTATTA
TATTTTTATTATTTACCCCAACATCCCCACAAAAAAAAAAAAAAATTTTA
CTCTTCCTTCTTTTTCATCTCTTACTTACTTTCTATAACTATTACTTACT
CTTTCTTTTTCCCTTTCCACAATCCCTCCCCCTATATCTTCCATATATAT
ATATTCCTAACATCTTTTTTCTATATTATCACCTCCCTTTTTATTCTTAT
CCCATTTCCAAACCCTCTCTTATCCATATATATCCTATTATCTAAATCTC
TCTACTACTTATATCCTTTTCTTATTATTACTTCAATTTTCTCTTTCTCC
CTCCCACATAATTTATTTTTCATTTTTTTCCCTCAACTCCTCCCTCTCTT
TTATATTCTTCTCTTCTTCTATCTCCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_a18.b1 MSMg01no213_a18.b1 CHROMAT_FILE:
MSMg01no213_a18.b1 PHD_FILE: MSMg01no213_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:59 2005
         (319 letters)



>mm_chr11_52899060_52899778
          Length = 719

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcccttcagactgtgagcaggaagaggtctccgctccctgaagttgttttct 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctgtcccttcagactgtgagcaggaagaggtctctgctccctgaagttgttttct 264

                                                                       
Query: 65  gcccagtgtttggtcacagccatgagaaaagtaaacaacacatgccctgaatggaagcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcccagtgtttggtcacagccatgagaaaagtaaacaacacatgccctgaatggaagcaa 324

                                                                       
Query: 125 ttggtgacatttgctctcatgtagccctgcatgccaagaagctgctccaggcaagctcag 184
           | ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcggtgacatttgctgtcgtgtagccctgcatgccaagaagctgctccaggcaagctcag 384

                                                                       
Query: 185 ggcttaaccctgagacgacagcggtgacatggtaagcccgtgcctgtccctatatctaca 244
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcttagccctgagacaacagcggtgacatggtaagcccgtgcctgtccctatatctaca 444

                                                                       
Query: 245 aattacctactgagggaaatggtccagggctcaaggtggggaagcccacccaggatggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattacctactgagggaaatggtccagggctcaaggtggggaagcccacccaggatggac 504

                       
Query: 305 atctgccatgtg 316
           ||||||||||||
Sbjct: 505 atctgccatgtg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)