BAC Information

Click to search

BAC

Clone NameMSMg01-213J15
Chromosome11 (Build37)
Map Location 14,760,324 - 14,760,628
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream geneLOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213J15.T7 (MSMg01no213_j15.b1)MSMg01-213J15.TJ (MSMg01no213_j15.g1)
ACCAG394542AG394543
length727733
length of high quality
(start - end)
34 (233 - 266)305 (429 - 733)
definitionCHROMAT_FILE: MSMg01no213_j15.b1 PHD_FILE: MSMg01no213_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:40 2005CHROMAT_FILE: MSMg01no213_j15.g1 PHD_FILE: MSMg01no213_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTGGGCGCCAACGAACCACAATTCCGCACCGNCNGAANCNNANNTTTACG
GGANCGNAGANNGNAGANGANNAGNNNANNANNCNNNNGNNTTTTTCCCC
CAANAAGAGGNGNAGANGAGNGCNGNGNGAANGAGGAACNNANAAAGGNA
AAAGAGACNCAAANCCCNGGAAGNCAGAANANANAGNNANAAGCGGCCAN
CCCNGGGAGCNGGAGCNTTTTTTTTGGGNCANGGAGACCAAACTCATGAC
CTCTAGAAAAGCCGNTAGGGCTTTAAACGGACGTTTTAGTGTTTTAGGCA
CAGCGCCCGCCCACACNCNNNAAAGAAAGANACACCCCCCCCCNGAGANG
NGGNNNAGNAAGGGAAANAAAGNCAGAGAAGCACACCCCCAAAAAAAAAA
AAAAANCAAGAGAGAGGGCGACACCCGCAAANACCCACCGGCACCNAGCC
CCAAACCCCCACCCGAAAACCANCACANCAACGGCCACCNACACACAACG
AGANAACGAGAAGCACACAACACAACNCACACCNGGCAAGCAGGGNACCA
CAGCACCCGCAACNNCGGAGACCGAAAGAACCAACCAACCGAAACCAAAC
CGGAGCCAAACACAGGAAACAGGCCAAACTTTTTTTTTTTTATAAAGGAC
CCGCCAATAACCCAGGATATTCACACTAATTAAACCTAACCAAAGGCCTG
GCTTTTGTACCACCTGCTCCCTGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCCGAAATCATGAAATTCTTAGGCAAATCCTGAGTGAGGTA
ACCCAATTATAATATCACCACAAATTCTTATTGTGTACTTCAAGTGAACC
TGCTATGCCAAGTTCCCCTTGTTCCCATTTACCATCCCTCTCCTGGTTAC
TACCATAAAACATAGATTTCATAGGCTTGAGCCTTGCTGATTATTTTCTT
TCTTGTTTGCAGTGAACTACTTTAATTTTTCTTAAGCTGAAATAAACTTT
TTCACTTTGGTGCCTTTGTTTAAACATATACTCAGCTGCCTGACCCTACT
TATTTTTTTTTTCACCCCCCCCGCTCACTTTAATATTTACTTTCTGTTAT
TTCTATTAAACACCGCAACTAAATATCTCCTTGATGATGTGTGCTTGAAG
CTTTGGAAATATATATCACATTAAGCAAAATGTCCTAATATGTATAACAT
CCTGGTTACATTTTATTTTTATATATACTATATAAGAAGAGTTTGTAAAC
TTTCTCTTTTCCTTTATTGGTGATAAAATTTCCCAACAATACATTTTGAT
TATGTTAGACCTTACTCTACTACTCCTAATGTATCCCCACCTCCCGTTTG
TGTGCACAGTCTTTTGTGGTTTATTGTCCCAGCACACTCCCTTAGAGGAA
AAAATACTTATTACCTATTAAGGTAATTATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_j15.g1 MSMg01no213_j15.g1 CHROMAT_FILE:
MSMg01no213_j15.g1 PHD_FILE: MSMg01no213_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:40 2005
         (305 letters)



>mm_chr11_14760124_14760828
          Length = 705

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgatgatgtgtgcttgaagctttggaaatatatatcacattaagcaaaatgtcctaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ccttgatgatgtgtgcttgaagctttggaaatatatatcaaattaagcaaaatgtcctaa 260

                                                                       
Query: 61  tatgtataacatcctggttacattttatttttatatatactatataagaagagtttgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtataacatcctggttacattttatttttatatatactatataagaagagtttgtaa 320

                                                                       
Query: 121 actttctcttttcctttattggtgataaaatttcccaacaatacattttgattatgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctcttttcctttattggtgataaaatttcccaacaatacattttgattatgttag 380

                                                                       
Query: 181 accttactctactactcctaatgtatccccacctcccgtttgtgtgcacagtcttttgtg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttactctactactcctgatgtatccccacctcccgtttgtgtgcacagtcttttgtg 440

                                                                       
Query: 241 gtttattgtcccagcacactcccttagaggaaaaaatacttattacctattaaggtaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttattgtcccagcacactcccttagaggaaaaaatacttattacctattaaggtaatt 500

                
Query: 301 atagg 305
           |||||
Sbjct: 501 atagg 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)