BAC Information

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BAC

Clone NameMSMg01-213K13
Chromosome11 (Build37)
Map Location 41,299,041 - 41,299,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213K13.T7 (MSMg01no213_k13.b1)MSMg01-213K13.TJ (MSMg01no213_k13.g1)
ACCAG394579AG394580
length836847
length of high quality
(start - end)
37 (224 - 260)266 (62 - 327)
definitionCHROMAT_FILE: MSMg01no213_k13.b1 PHD_FILE: MSMg01no213_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:45 2005CHROMAT_FILE: MSMg01no213_k13.g1 PHD_FILE: MSMg01no213_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAACCGATCCTATGGGGAGGGCCCGGGGATTCCCGGGGGAATTTTGGGG
GGTTTTTTTTTTCTCCTTTTGGGGGATATATTTTTTTTTTTTTCGCGCCC
TTTTTTTTTCTCTTAAAAAAATTGAAGAACTCTCTTGGGGTGGGTAAGAA
GAATTTTTTTTTTTTTCCTTCCTCTGCGTGTCATTTCTTATATGCTGCAT
TCAGACTAATAGATTTACAGTTCTCTTCCTTTCATTAACATATATTTATT
CAACTCTCATATCATGAATTCTGAATGATATATTCTGATAAGGTTACTTT
TGCAGCTTATTGTTTTCACCATACTAATAATGTGGGGTCCAAAAAAAAGG
GCCTCTTTTTTTTTTTTTAATATGGCCCCCCCCACCCCCCGCTCTGTACT
TTGACTGAGGGCATGGGATGAGAAGTTATTTCACCCCCCCGCAAGAAAAG
AAATAAAAAATAACACCTGCTCTGGGGATATGGTTAATAATACACATTTA
TTATGCCTTGGAGAGACAAAAATTATTGAAACGTAGGGGAAAAACCATAT
ATGGATCTAGTCTCCGTCTCGATATTGTATAATCATCATATGTTGGTTTA
AAGAAATATATAAGGGATGAATTGTGAAAAAGATTATTATAAAGTTGTAA
GCAATAAGTGTCCGCGAGCCAATACAGCAAGCGTCGATACACCGTACCTC
GACAGTCATGTAGTTGTTACTGTCCAAACAAAAACGTAGTACTGGGTGCT
GCGCAGCACCAATAGAAGTATGTATCCCGTGAGATAATGGTCAGTGTATA
AAACTGTAACTGATCAATTTAATATGAGCTCATTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGCTTATGGCTTAGACACAGTCAAGAGAAACATGAGGGA
GCACTTTATGATTCAATGGAATTACTGAAAACCATTGTAGGATGGCAATC
TGACATGGTGGTTTAATGTATTTTAAATAATTTGCATACAAATTAAAACA
CAATGAAAATAACTAAAATATATCTCTTGTATTTTTGGTTGTGAGCCTAA
TCTTTAAGTTGAAATAGAACAGACATCATGAGTGGATATGGGTAGGGGAA
TGGAAGAGGTAGGGCTGTATAAGGGCGAAACTGAAATTGAAAATAATATT
TTTTTTTTACCCCCCCCCCCCCCCCCCTCTATTTTTTTTTCTTAAATATA
TTTTAAATACCCCCCCCCCCAAATTAAAAAAAAAAAATACTATTTTTATT
TAATTTTCATTATTACCATTAAAAATTACCCCCCATTTTTTTATTCCCCT
AAAATTACATAATTTATTATATAATATAAATTATAATTTTATTTATTTTT
TTTATACTTTTTACTAATTTATATTTTTTTACTAATACCTCCATTTCATA
TTTTCTTTATTCTTACTCATAATTTCTATACAATCTCTAATCAATATATT
TTCATACTAACTTCTATCCATCATTCATACAACATATATTATTTTTCTAA
TATTAAACATCAAATTAATTTCCTTCCTACAACTCTTATATTTACTCACT
TCTTTATATACATCCTCCCTATCCTTTCTCTTTCTCTACCCCTCTATTTA
TAATTAAAACAATAATAATTATATAACTATTTCCTACACACTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_k13.g1 MSMg01no213_k13.g1 CHROMAT_FILE:
MSMg01no213_k13.g1 PHD_FILE: MSMg01no213_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:45 2005
         (266 letters)



>mm_chr11_41298841_41299506
          Length = 666

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttatggcttagacacagtcaagagaaacatgagggagcactttatgattcaatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttatggcttagacacagtcaagagaaacatgagggagcactttatgattcaatggaa 260

                                                                       
Query: 61  ttactgaaaaccattgtaggatggcaatctgacatggtggtttaatgtattttaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactgaaaaccattgtaggatggcaatctgacatggtggtttaatgtattttaaataat 320

                                                                       
Query: 121 ttgcatacaaattaaaacacaatgaaaataactaaaatatatctcttgtatttttggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatacaaattaaaacacaatgaaaataactaaaatatatctcttgtatttttggttg 380

                                                                       
Query: 181 tgagcctaatctttaagttgaaatagaacagacatcatgagtggatatgggtaggggaat 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tgagcctaatctttaagttgaaatagaatagacatcatgagtggatatgggtaggggaat 440

                                   
Query: 241 ggaagaggtagggctgtataaggg 264
           ||||||||||||||||||||||||
Sbjct: 441 ggaagaggtagggctgtataaggg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)