BAC Information

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BAC

Clone NameMSMg01-214B09
Chromosome11 (Build37)
Map Location 32,578,006 - 32,578,552
singlet/doubletsinglet
Overlap geneFbxw11
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10
Downstream geneLOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B09.T7 (MSMg01no214_b09.b1)MSMg01-214B09.TJ (MSMg01no214_b09.g1)
ACCAG394858AG394859
length722726
length of high quality
(start - end)
601 (122 - 722)554 (77 - 630)
definitionCHROMAT_FILE: MSMg01no214_b09.b1 PHD_FILE: MSMg01no214_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:18 2005CHROMAT_FILE: MSMg01no214_b09.g1 PHD_FILE: MSMg01no214_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGACACCCCAAGCTTAGCAACAGCACCTGGTACAACCTTGGCT
ACCTCTGGAATACATTTTTCGTGTGCTGACTCTGAGGAAACACTTTGCAG
AGGAATTTGCCTCAAAGATATCTCCCCCCAACAACACCCCTCCACCACCA
CCACACCCTACCCCGGTTTTCCAAGGCAGAGTTTCTCTGTGTGGCCCTGT
CTGTAGGTCAGGCTTGCCTCAAACTCGGGTATCTGCCTGCCTCTGACTCC
CAAGTGTTGGGACTAAAGAAGTGTCACACCTGCGTTGTACTGGTCTAATT
CGCAGTTAATTGTTCAGCACCAGCTGACCAGAACTATAAATTCAAAATAT
TCAGTGGCCCTCCATAGTACCTTTTATGTTTCCCTTTGAAACTCTATAAG
CCAGGCCTCCAGCATCTGCACTGCTCTCAGGATTATTTTCTAAATTCCCA
CAATAGCTCCTTAAGCTCCGAACACTCAATAGCTTTTCTGACCCTAAATT
CCAAAGTCCTTCCATCATCCTCCCCAAAATAGCATGTTCCAATTGTCACA
GCCTTACCCCCACTCCTGGTACCAATTTCTGTCTTACTTTGTTTTCTTTT
GCTGTGATAGACACCATGACTTAAAGCTACTTGGTGAGGAAAGGGTTTAC
TTCACCTTACAACTTCCAACAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTCATGAATCACTTGCCTGGCA
TGTGCAAAGGTCCTGGGTTCACCCCCAGGACTGCCAAAATGAAAAACAAC
AAAATCACCAAGAGAGTCCTAAATTGAACTATTGAGGATATTTGGGACTT
TATTTAACTTGAGTAATCCATGTAATTAACATGTGATGTGGGTCTTTTCT
CTGACCATACAGTCTGATAGAACTACTATTTCAACTAGTATGTGTAATAA
TGTGTGTAACGGGGCCTCCGGGTAGAGAGCTCATTTTAATAGAATCACTC
ACATGCCTATGGACCTTAGATAGCTGGTGTTCAAACAGATCATCTGTAGA
CCGAGATAGTGTGCTCTTCAGGACTTACTGTGAGACTTTACCGTGACAGT
TGTCATAGTAGGAACGGGTTAGAGGAGGTCAAGAGATGGCAGCTACTTTC
ATTGTATTTTACAAAGCTGTTCTCATGTCTCTCTGAGGTTGCTTCTCTCT
GTTGCAAAATGGTTGGACAACAGACTCTGTCCTGTAGCAGCAGACAGTTC
CCCACTGTATCTCCCAAGGCAAGCTTTTAATAAGTACTCAGGTCGGAATG
TGTGGTGGCTTTCCTTGCTTACAGAGGTCTGCTGCCATTTATTCCCTTTG
CTGTCCTTGTATTTTGTGTCCTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b09.g1 MSMg01no214_b09.g1 CHROMAT_FILE:
MSMg01no214_b09.g1 PHD_FILE: MSMg01no214_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:18 2005
         (554 letters)



>mm_chr11_32577799_32578752
          Length = 954

 Score = 1019 bits (527), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 6/553 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   actcatgaatcacttgcctggcatgtgcaaaggtcctgggttcacccccaggactgccaa 61
           ||||||||||||||||||||      ||||||||||||||||||  ||||||||||||||
Sbjct: 208 actcatgaatcacttgcctg------gcaaaggtcctgggttcagtcccaggactgccaa 261

                                                                       
Query: 62  aatgaaaaacaacaaaatcaccaagagagtcctaaattgaactattgaggatatttggga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatgaaaaacaacaaaatcaccaagagagtcctaaattgaactattgaggatatttggga 321

                                                                       
Query: 122 ctttatttaacttgagtaatccatgtaattaacatgtgatgtgggtcttttctctgacca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttatttaacttgagtaatccatgtaattaacatgtgatgtgggtcttttctctgacca 381

                                                                       
Query: 182 tacagtctgatagaactactatttcaactagtatgtgtaataatgtgtgtaacggggcct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacagtctgatagaactactatttcaactagtatgtgtaataatgtgtgtaacggggcct 441

                                                                       
Query: 242 ccgggtagagagctcattttaatagaatcactcacatgcctatggaccttagatagctgg 301
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgggtagagagctcattttaatagaatcactcacatgcctatggaccttagatagctgg 501

                                                                       
Query: 302 tgttcaaacagatcatctgtagaccgagatagtgtgctcttcaggacttactgtgagact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgttcaaacagatcatctgtagaccgagatagtgtgctcttcaggacttactgtgagact 561

                                                                       
Query: 362 ttaccgtgacagttgtcatagtaggaacgggttagaggaggtcaagagatggcagctact 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttaccgtgacagttgtcatagtaggaacgggttagaggaggtcaagagatggcagctact 621

                                                                       
Query: 422 ttcattgtattttacaaagctgttctcatgtctctctgaggttgcttctctctgttgcaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcattgtattttacaaagctgttctcatgtctctctgaggttgcttctctctgttgcaa 681

                                                                       
Query: 482 aatggttggacaacagactctgtcctgtagcagcagacagttccccactgtatctcccaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatggttggacaacagactctgtcctgtagcagcagacagttccccactgtatctcccaa 741

                        
Query: 542 ggcaagcttttaa 554
           |||||||||||||
Sbjct: 742 ggcaagcttttaa 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)