TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACTATGCCCGCTAATCTTTTAGTGTGCTTGATTTTATTTTCA
TGTTTATTGATTTCTTACTTTACCTCTACTTTACAGGTTAATTTCTTCAA
AGAATTTTGTGCATTTTCTCAGACATTGCAACCTCAGAACAGGGATGCTT
TTTTCAAAACCTTAGCAAAATTGGGAATTCTTCCAGCTCTTGAAATTGTA
ATGGTAATTGTGGTTTCTTCTATGCTTTTGAAGCTGTAAATTTGTCGTAG
ATTCATATTTTGGATGTTCTTAACATACTTAAAACAGTCCTAACTTATCA
TTTAGTCATTGATCTGATACTGAGTCATCACAAGAATGATTTCATTACCA
GATTTGTACCATCAGTGTTTGCGTTGGTTTTTCAAAGACTATTGTCTTAC
CTTGAGTGACACTGTTTCATAGAATTGGGTAAGTTGTCCTCCCTTTTCAG
TCCAGCTAGCAGAGTGAGGAAGGACTGAACCAACGGGCCTAAGCTTCCAA
ATAAGAGTAGGCTCTAGTTGTCTGATTTCAGTTTGATGGATTTGATTCAT
AGATGTTCATATAAAAACTTAAATATAAGTGTTCTATTTCTTCATATATG
TGTCTGTTTACATGAACATATGGTGCATGTGTGCCAGTGCCAGTGGATTA
CAGGCGTACACCACTATATTCAGCTCCATGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACACCCCAGAAGTTAAGCTACT
ATTACTATTTTGTTAGTAGACAAATAGTAATATTTGTCCCTGGGTAGACT
GTCCTCCGTTATATAAGAACGCAGACTGAGCAAGACAGAAGGTATCAAAT
GCCTTCACACTTCTGCACCCACAGGTTAGTGCAGCTCTCAGACACCATCA
GAGAAGTCTTTTGGGGCAATGGATGGTGGTTAATGGAAAAACCCACAACT
GGTTTAAGTACAGAGAATAATGTTTGTGGAGAGCTCAGCTACAAGTGAGA
TGTCTATATCACAGTCTTTCTCCACGCCCCCCCCCGCTCACAAACCAGGC
CCAAGTAGAGGAGCTTTCTGACAGTTAATGGTATCTAAGAAAAGTGTAAC
CACACCCTAATTCCACAAAATAATGACTCTGAGACTTAATTATATATGAA
TAAATGCCTAGGTCATAAGCTTGGGCTCATTCTCCAACTTGCTCATAACT
AAATTAACTCATTTATTCTATTCTGTGAGTGCCACATGGCTGATTACCTC
TTCTCAGTTTCATGTGTCTGTCTCCTCAAAGTTTGAGGTGGATCTCCTCC
CCAGCTGATTCTATCACAAAAATCCTCTCTCTGTCCTGGAACTCCATTTC
TGTATTTTCTGGCCAATCAAATATGCTAACAG

Query= MSMg01no214_e07.b1 MSMg01no214_e07.b1 CHROMAT_FILE:
MSMg01no214_e07.b1 PHD_FILE: MSMg01no214_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:32 2005
         (486 letters)



>mm_chr11_29095884_29096768
          Length = 885

 Score =  862 bits (446), Expect = 0.0
 Identities = 473/482 (98%), Gaps = 1/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtactatgcccgctaatcttttagtgtgcttgattttattttcatgtttattg 64
           |||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctgtactatggtagctaatcttttagtgtgcttgattttattttcatgtctattg 264

                                                                       
Query: 65  atttcttactttacctctactttacaggttaatttcttcaaagaattttgtgcattttct 124
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttcttactttattt-tactttacaggttaatttcttcaaagaattttgtgcattttct 323

                                                                       
Query: 125 cagacattgcaacctcagaacagggatgcttttttcaaaaccttagcaaaattgggaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagacattgcaacctcagaacagggatgcttttttcaaaaccttagcaaaattgggaatt 383

                                                                       
Query: 185 cttccagctcttgaaattgtaatggtaattgtggtttcttctatgcttttgaagctgtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttccagctcttgaaattgtaatggtaattgtggtttcttctatgcttttgaagctgtaa 443

                                                                       
Query: 245 atttgtcgtagattcatattttggatgttcttaacatacttaaaacagtcctaacttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttgtcgtagattcatattttggatgttcttaacatacttaaaacagtcctaacttatc 503

                                                                       
Query: 305 atttagtcattgatctgatactgagtcatcacaagaatgatttcattaccagatttgtac 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttagtcattgatctgatattgagtcatcacaagaatgatttcattaccagatttgtac 563

                                                                       
Query: 365 catcagtgtttgcgttggtttttcaaagactattgtcttaccttgagtgacactgtttca 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catcagtgtttgtgttggtttttcaaagactattgtcttaccttgagtgacactgtttca 623

                                                                       
Query: 425 tagaattgggtaagttgtcctcccttttcagtccagctagcagagtgaggaaggactgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagaattgggtaagttgtcctcccttttcagtccagctagcagagtgaggaaggactgaa 683

             
Query: 485 cc 486
           ||
Sbjct: 684 cc 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space:   416500
Effective search space used:   416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)