BAC Information

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BAC

Clone NameMSMg01-215B11
Chromosome11 (Build37)
Map Location 77,072,640 - 77,072,826
singlet/doubletsinglet
Overlap geneSsh2
Upstream geneNxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108
Downstream geneLOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215B11.T7 (MSMg01no215_b11.b1)MSMg01-215B11.TJ (MSMg01no215_b11.g1)
ACCAG395469AG395470
length733851
length of high quality
(start - end)
174 (118 - 291)187 (179 - 365)
definitionCHROMAT_FILE: MSMg01no215_b11.b1 PHD_FILE: MSMg01no215_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:38 2005CHROMAT_FILE: MSMg01no215_b11.g1 PHD_FILE: MSMg01no215_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAGA
TTTCAAAATTAAATATTCATCACTCCAAATTAAAGGTAAGTGTGAAAATA
AGATTACTCTCTCCCTTACAGTTATCAAGCATGAAGACTTATTTCCTAAT
AATCTTAGGCATCTAAAAAAATTATAAACACAAGCTCATGGTGATTCTCC
TGCCTCAGTCTCCCCAGTTATAACTGTGATTATAATTGTGATCCACCATG
CTTAGATCCATAAATAATTTCAAAAAGAAAGGAGCACTGTATAAGCAGAA
AACAATATGTATAACTCTTAGCACCAAGTCTGCCTGTAGGCTGCTATGCT
TTTTCTTGTTAAACCACCCCACCCCGACATTGTAAGCAGCTCCAATTAAA
TGCTTCCCATTATCAGAAAAGAAAAGAACATGGTGCCCCTTCACAGCAAC
GAAACCCTAACTAAGACAGAAGTTGGAACCAGGAGTCGGGCATTGCTGTG
ATAGACCTGAACATGGTATTTTGTTTGTTTGTTTGTTTGTTTGCTTGTTT
TGAGGAATGTACATCTTGGGACTTCGGATTAAAAAAGTAATGTTATGCTT
TTAAGTGAAACTTATAGGTCTAAACTAGTAAAAATCTTGTATGACCGTGT
TTGTTGAGAACGATTTTGAACTTCAAAAGGTTTCCGTAATAAAATATTTT
TATGTCGTTTCCCTATTATATAACTCTTTTGCG
ATTTTTAATATTAAATACCGAGCCTACCTAACCTTCTCATTTTTNNTTCA
CAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAAAAAGATGTTAATATCCCACTTACAACTG
GTAGAGATTGAGGTATTTTTAGCCCCAGTAAAGTTTGCCCCTAGCTTTTG
GGACTACAAAACTTAAAAGCATATTCTCTTATAGCCATTTATAGGCAATC
CCTTTTCATGACTGTGTTGAATAAAGATATATTGACTTACCTACAGTACT
GCTTTCTGATTCATTTCATTTCAAAGAGTACATCAGAAACTATATCTTCC
TTGATTATTTAATCAAATATTTTTTTGAAACAAAATACAACTTCTACCTC
TCAGATTAGCTTTTTTTTTTATGAAACTCCCACCACAATATCTGAGAATA
TAAAGTAACATCTTCCTGTAACTCAATAAAAAATTAAAAAAAATCTTATA
GAGATGTGTTTTATATTGGCTAGGTATATTCCAGAATTTAAACGAATACT
CATAGATGTTCTTAAAGAATTATAGACAAGTTAATCTAATCCGAATAATA
TATTATACTCATGTACTGGACAGAAAATTATTTCCCAAGTATAGATTAAT
AAGTATTTCTATTATTCCTAGGAGAAAGTGAAAAAGTTTAAATTAATAGT
ATCATCTTTTACTATTTTATTTTATTTTGAAATTCAAATACCCGTGTTAA
TAATTTCCTTTGAAGGTCATAAGGAACCACTTTTTTCATAAAAAATAATA
AAAATAACTCTTTTATTTGTGTAATTGTATACCTCTTACCTATATTAATA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_b11.g1 MSMg01no215_b11.g1 CHROMAT_FILE:
MSMg01no215_b11.g1 PHD_FILE: MSMg01no215_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:38 2005
         (187 letters)



>mm_chr11_77072440_77073026
          Length = 587

 Score =  331 bits (171), Expect = 2e-95
 Identities = 183/187 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagtttgcccctagcttttgggactacaaaacttaaaagcatattctcttatagccat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 taaagtttgcccctagcttttgggactgcaaaacttaaaagcatattctcttatagccat 328

                                                                       
Query: 61  ttataggcaatcccttttcatgactgtgttgaataaagatatattgacttacctacagta 120
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 327 ttataggcaatcccttttcatgcctgtgttgaataaagatatattgacctacctacagta 268

                                                                       
Query: 121 ctgctttctgattcatttcatttcaaagagtacatcagaaactatatcttccttgattat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 267 ctgctttctgattcatttcatttcaaagagtaaatcagaaactatatcttccttgattat 208

                  
Query: 181 ttaatca 187
           |||||||
Sbjct: 207 ttaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)