BAC Information

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BAC

Clone NameMSMg01-215E04
Chromosome11 (Build37)
Map Location 85,474,428 - 85,474,705
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215E04.T7 (MSMg01no215_e04.b1)MSMg01-215E04.TJ (MSMg01no215_e04.g1)
ACCAG395570AG395571
length7331,011
length of high quality
(start - end)
278 (435 - 712)---
definitionCHROMAT_FILE: MSMg01no215_e04.b1 PHD_FILE: MSMg01no215_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:52 2005CHROMAT_FILE: MSMg01no215_e04.g1 PHD_FILE: MSMg01no215_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAGTTCCAAGGTTTCATAAGAAATAAGGTGAAAAAAGCCAAGG
TTATAGGCAAGGCAGGTTCTGCCACATGTGAGGACATCTCAAACTGTCAG
CAAGGTGTTGCCCAAGAAAGAGACTCTGTGGAGGAGAGCTTCCATATAAA
TCCAGGCATCCACAGATCTCAGAGCATTTGTTCATCCCTTGAGCATGGAT
GAAATGTTGAGATATTTTCAGTGTGTGAACAAGACTAACAGGGACACTCA
TGTACAAATTCATATACATGCATATACTTATCCTGCAAGAAAACACAAAC
TATTTTGTTGGTGTTGTTGGCACCCCCCCCCACATGAGGACCAAACCCAG
GGCCTTGTGCTTGCTAGGCAAGCTCTCTAACACTGATCCCCAATCCAACA
CAAACTATTTTTAAAGGAGATATGCCATTCAAAACCTCAAAGATTCTCCC
CACCTTACCCACGCTTGGTGCTGTCAGGCTCGGATTTGAGCCACTCTAGT
GGCATCTGGTGTCATTTGTCCTAACAACAAGTGACAGAGCATCACTTTCC
TTGTGATCTTAAAATCTTCTTGGTGATTGTTGTGTCATCACTGAGTTATA
AAACTCCTTTCACAATCTGCATACAATTTGTTCATGAATATGGTCATCTC
TTGTTCTCTGGGGAAGGGTGTCATACAAAGTCA
GTGGTGGGGGTGGNGTTTTTGCGCTGTGTCGTGGGGGCACACCCCACAGC
AAATAAAAGATAAACTAGGAGAAAAAAAGTTTCCCACACCCCAGTGTAAC
CAAGAATGTTCCGCGGGGATGCGGAGGGGTGAGATCCCTCTGGGTGAATA
GAGCCGAGATGGGTGTGCCACCAAATATGGACTTTTTTTGGCTTTTTGAA
CAGTGTTTTACTTTTCAATTAAAAACATAAAAACATTTTATTAGGGTTAT
ACAAACATTTATTGATTATTTATTGTTAGAGAATTACAAAATATATACGG
AGAGAGGTGGAAAAAATTTTTTCGAATCATTCGCTGTTTTTGTTGGTTAG
TGGATGGGTGAGGTAAATTTTAATGGTATAGATCGGAAACGCCCAACGTC
CCTTTTTTGGTTTTTTTCCCCGGTGCTTTGGAAAGTTGAACAAACAAACC
AACAGCGGTATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCAGAAAG
TGTGAGGGTTATGGATATGAGTGTTTGGGGGGGGTGTTGTCCCCCCCCCC
GCNTAAATTNTTAATTTCTGGCGTTTTTTCGATATCTGGGGTATCTATAA
TAATAGGGGGTATTTATGATTATGGTAGTTAAGGATAGGATTCCGCACTT
GTTGTATGTAGTTACGGGGTAAAATAGATTCCTCATTTGACGCAAAAAAG
ACCAATATATTTAGCTAAAGAGAATGAGATAGAAAGAGAAAGAAATGTAA
TAAATAGGTAGTATTCTGACGCATATGAAAGAACAGATGAAGAAGATAAT
GTATCGGTCTTCCATATCACCCTGTTGAGCGGTGTTATATTATTCAGCGC
CATCGCTACGCCANTTTAATGTGTTATGTTCTACTTCTGCTATCGGTTAC
GTGTTTTATTTACGCATGGCGGGGGTCTGGTTTATTTGTTATATTACCCA
CTCATAATACCATATTGGTGTAGTACGTGCGATTGAAGTGAGCGGACCTG
TGGTGCGCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_e04.b1 MSMg01no215_e04.b1 CHROMAT_FILE:
MSMg01no215_e04.b1 PHD_FILE: MSMg01no215_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:52 2005
         (278 letters)



>mm_chr11_85474228_85474905
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatccccaatccaacacaaactatttttaaaggagatatgccattcaaaacctcaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gatccccaatccaacacaaactatttttaaaggagatatgccattcaaaacctcaaagat 419

                                                                       
Query: 61  tctccccaccttacccacgcttggtgctgtcaggctcggatttgagccactctagtggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tctccccaccttacccacgcttggtgctgtcaggctcggatttgagccactctagtggca 359

                                                                       
Query: 121 tctggtgtcatttgtcctaacaacaagtgacagagcatcactttccttgtgatcttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctggtgtcatttgtcctaacaacaagtgacagagcatcactttccttgtgatcttaaaa 299

                                                                       
Query: 181 tcttcttggtgattgttgtgtcatcactgagttataaaactcctttcacaatctgcatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcttcttggtgattgttgtgtcatcactgagttataaaactcctttcacaatctgcatac 239

                                                 
Query: 241 aatttgttcatgaatatggtcatctcttgttctctggg 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatttgttcatgaatatggtcatctcttgttctctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)