BAC Information

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BAC

Clone NameMSMg01-215F01
Chromosome11 (Build37)
Map Location 104,282,671 - 104,282,778
singlet/doubletsinglet
Overlap gene1700081L11Rik
Upstream geneLrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215F01.T7 (MSMg01no215_f01.b1)MSMg01-215F01.TJ (MSMg01no215_f01.g1)
ACCAG395607AG395608
length707720
length of high quality
(start - end)
110 (180 - 289)191 (105 - 295)
definitionCHROMAT_FILE: MSMg01no215_f01.b1 PHD_FILE: MSMg01no215_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:56 2005CHROMAT_FILE: MSMg01no215_f01.g1 PHD_FILE: MSMg01no215_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACACATTTTGCCTCAGAAAAAGTGTATGACAGCCCTAGCTCAATATGAGT
ACTTTCTACTTTTATAGCATGAAAACCAGTCAAAAGTTGCAGAAACAGGT
AGAAGCTCCATCTGCAGTAGTTATTAGCCTTAGCCCTCCAACCCCCAATT
CCCTTTACCTAACTTCCTTCAGAATCTCACAGCATCACACCCGCTACCTA
TTCAGAGGAGAGAGCTGGAGAGTATCTTTGCGCACACGAATCATAGAAGA
GGAAGAGACATTATATTCAAGATGTTGAGCAACCCAAATACCAAGAAACA
ATAACTTCTTTGGACTGCCTCCCCCCCCAGACATACTTAGTCCTACAGCC
GACATGTGTGTTGTTGGTCAGAACTAGATACATGGCACGGTGTCGTTTGC
TCATAGTCATCATTAGCACCTCCATTTATCAGAGATGATAAGTTACTACT
CCTGGCTGAAATTTTTTTCCTTCCCTATTGTTGTGGAGATGAAGGAATGG
GAGAGTAACATAATATCTGACTGCCACTTGTGGCAGCAGCATCTCTGCGT
CTTTAATTTGNAGAAGAAACTATTAATATACAGCTTTTCAGAGTAGCCTA
GTGACCAACGAGGACAGCAGAATCTATCAAACTTTGAGAGTCCACCCTAT
TATAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTAGC
ATTCCTCAGAAACAAACACTTATTACTGAACTTAACAAATTAAAATTTAA
GACTCTCCAGTATATGCGGACGTTGTCCTGGTTTTCTTGGATAACCATTT
CGTTTCTGATTTTGCGACTTGATTAAAAAGATCTTAAAAATTAAAAAAAA
AAAGTCTCTTTGTAGTCCAGGCTGGCTCTTGAACTTAATAATTTTCTACA
TTAGTCTCTTGTGCTAGAATCACAAGCGTATGACACCATGCTCTTTTTAT
GATTATTATTCTAGATGTAATGTTTATGGGTGGCACATATTTTTTTATCT
CCCCCCGACGCGCCTGAGTTACTAAGTCTTCCTCCTCCTTGGTCTGCTGA
CAACAAAAAAAAAACAGTCCCAGGAGGCGACCATTGTTCTCACCTCTGAG
AGGAATTTTTGAATCTACTTTCTCCTAATTCCTCCCTGGAGCGTGATATT
GGTGTCCTTTCCAGGTCCTCAAGAACTTCCGATCTGGTTGACCTTCAAAA
AAACCAGTAGATAAATGTGCACACCCCTCATGAACACAATCTTTATACTA
TACACAACGGTAATCCGGGGGGCGGCGGTTTTATTAGATATGAGTTCACT
GTATGAATAAATTCTGGTAATATCGCAAAAGTAGACGTTCTCNTTTTATT
TGGTTAATATAAAAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_f01.b1 MSMg01no215_f01.b1 CHROMAT_FILE:
MSMg01no215_f01.b1 PHD_FILE: MSMg01no215_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:56 2005
         (110 letters)



>mm_chr11_104282471_104282980
          Length = 510

 Score =  194 bits (100), Expect = 2e-54
 Identities = 106/108 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagccctccaacccccaattccctttacctaacttccttcagaatctcacagcatcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagccctccaacccccaattccctttacctaacttccttcagaatctcacagcatcaca 260

                                                           
Query: 61  cccgctacctattcagaggagagagctggagagtatctttgcgcacac 108
           |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 261 cccgctacctattcagaggaaagagctggagagtatctttgtgcacac 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)