Query= MSMg01no215_j14.b1 MSMg01no215_j14.b1 CHROMAT_FILE:
MSMg01no215_j14.b1 PHD_FILE: MSMg01no215_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:19 2005
(291 letters)
>mm_chr11_80814176_80814866
Length = 691
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Plus
Query: 1 ggggcatgtctccactgcctcccaatttggccactggtcctcagtcttgctctattctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggcatgtctccactgcctcccaatttggccactggtcctcagtcttgctctattctac 260
Query: 61 tttgtcacttacattgcccaaattctcctttggtatctaatgtggcttctttttgtaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtcacttacattgcccaaattctcctttggtatctaatgtggcttctttttgtaggt 320
Query: 121 cactcacagataggctctgaccttaagttcccatttccaaatatttatccataggctgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactcacagataggctctgaccttaagttcccatttccaaatatttatccataggctgta 380
Query: 181 tctagaaggatgcctgtatctcccacacagagatgaggctgctgtgtcagccctgcctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagaaggatgcctgtatctcccacacagagatgaggctgctgtgtcagccctgcctgt 440
Query: 241 cctactgccaggtcctatggaggcccttcaccacctggagactgaatcatc 291
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cctactgccaggtcctatggaggcccttcaccacctggagaccgaatcatc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no215_j14.g1 MSMg01no215_j14.g1 CHROMAT_FILE:
MSMg01no215_j14.g1 PHD_FILE: MSMg01no215_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:19 2005
(651 letters)
>mm_chr11_80924891_80925939
Length = 1049
Score = 1181 bits (611), Expect = 0.0
Identities = 641/651 (98%), Gaps = 2/651 (0%)
Strand = Plus / Minus
Query: 1 aatccctgagaggaaaaggggatggcacaaaactgcattttaggatggcccaggcagcag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 849 aatccctgagaggaaaaggggatggcacaaaactgcattttaggatgggagaggcagcag 790
Query: 61 aagaccagttttccctgacctgacctttttaggcagaaccccccccccctaaaactcctg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 789 aagaccagttttccctgacctgacctttttaggcagaa-cccccccccctaaaactcctg 731
Query: 121 cccagctccccctgccaacccagagctactcacttctggaatggtcatctgatactgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cccagctccccctgccaacccagagctactcacttctggaatggtcatctgatactgttt 671
Query: 181 ggcagtcgtgagggtctcagctggtggatgtggcctctgagccccagagctcctggtaac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 670 ggcagtcgtgagggtctcagctggtggatatggcctctgagccccagagctcctggtaac 611
Query: 241 aggaccattaacaatttgatggaaatgattttgaaaaacttgcattagaaaacttgcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aggaccattaacaatttgatggaaatgattttgaaaaacttgcattagaaaacttgcatc 551
Query: 301 tgctttccatggcctgtttaaaggggggggtggggaatcaccagacaagatcctgggaac 360
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 550 tgctttccatggcctgtttaaagggggtgg-ggggaatcaccagacaagatcctgggaac 492
Query: 361 ccacataatatccgaagccagcagatggtgtctttgtgcagaccacaggtggggcggtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccacataatatccgaagccagcagatggtgtctttgtgcagaccacaggtggggcggtgg 432
Query: 421 gggcctcctcatctaattatcctagctcagtggcctcagcatctccttggagaccagcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gggcctcctcatctaattatcctagctcagtggcctcagcatctccttggagaccagcta 372
Query: 481 ccttccacctgtacatttggagaagccaaggtgctcagaagaaacaagatggtcgatgta 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 ccttccacctgtacatttggagaagccaaggtgctcagaagaaacaagatggtccatgta 312
Query: 541 tttttcaaatatcagaccaactcattcttctcatgaaaaccagagtgtccagggtcagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttttcaaatatcagaccaactcattcttctcatgaaaaccagagtgtccagggtcagat 252
Query: 601 ggtcttcagagactcttcccacccgagtctcatcactgagagccatggccc 651
||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 251 ggtcttcagagactcttcccacccgagtctcatcactgaaagtcatggccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space: 665999
Effective search space used: 665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
