BAC Information

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BAC

Clone NameMSMg01-217A17
Chromosome11 (Build37)
Map Location 101,238,392 - 101,238,773
singlet/doubletsinglet
Overlap geneG6pc
Upstream geneJup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949
Downstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217A17.T7 (MSMg01no217_a17.b1)MSMg01-217A17.TJ (MSMg01no217_a17.g1)
ACCAG396707AG396708
length1,2801,300
length of high quality
(start - end)		421 (26 - 446)395 (67 - 461)
definitionCHROMAT_FILE: MSMg01no217_a17.b1 PHD_FILE: MSMg01no217_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:20 2005CHROMAT_FILE: MSMg01no217_a17.g1 PHD_FILE: MSMg01no217_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCTATGGGCCTAACACTCCTAAGGGAGAGGATCCGCGGAATTCAGC
ATAGCAACACACTATCTGGCTTATTCAACATTAACAGAAACATTACAGGG
CATCACGACTTTGTTCCTGTGGGCTGCGGGCTTATCTTTGTTCACATAGC
AACCAGTTGATGTATGACTTTACCTGGCACCAAGGTCAAGGGGCAGTAGA
CGAAGGGGAGGTTCCGGCCAGGTGGTGTTGACCCAGACAAGATAGCCCTG
CTTGTACAATCAAGCTGTTCTTAGGAATGTCTTAACAACAGCCCTGTCTG
TTCTGCTTTGTTCTCGGCCCAAGGTAGGGGCTCATAGACAACTGTTTTAC
ATGAATCACAAGACACAAAATCTCATTTTCTTTTAGGATCTCATAGTTGT
TTAATAGAGCAGTGTAGTGGTAAACCTGCCCAATCTAAGTGTGCAGTTTT
TTTTTTCCCCCCCCCCCCCNTGNATGTTCTTTGCACGAAAAAAAAGAGAT
TGGAGATTTACTGCAACAATAGACTATGGCCACATTCTGCTCTAAGTATT
TTATGCCTTATCGGTAATTATCCCCTGTATTAGTCACTTGGACATCACTG
TGACCACAGTACCTGAGAGAACCAATTTAAGGTAAGAAACATATATGGAT
TCATATACTGTGCAAAGGCCCTTTCTTAGTGACCTACTTCTTTGATGATG
TTTCTAGAGAGGTTTAACTGAGGGAAGGAGAGCAATTCAGAATGAGTGTG
ACATCATCCAATGGACTAGGAGTCTAATATTGAAGAAAATGGGGACTGGA
AACATGGCTCAGCGGTTAATAGCTTTGGCTCCTCTTCCAGAGGTCCTAAG
TTCAGTTTCCCACAAACACGCAATGGCTCACAACAATCTATAAAGAGATC
TGAATGCCTCTTCTGGTATTGCGGTATACATGCAGATAAGACACTCATAT
TCATAAAATAAATTACTTTTTTTAAAAAATTGAAGAAGAAATGGGGGAAA
AAAAGGGTCCATTTTCCATAAAGTTTCCCGAAATCCTCCAAGGGTCTGTG
TACCAGCTTGGAAATCAGTTGTTTAAAGTGTAAATCCGGTGGGGGAATTT
CCCATTTCTACCTTTTTCTTAGTCGCCCCATAAAAATTTTTTTTACTTTA
TGCAGAGAATGGTTTATTTTTTTTCTTCAAAAATAAATTTTCATTTGGAG
GGTGTCTTTTAAAAAATCCTCGGTCTTCAATATATTAATTATTACTTTCG
TCGCCGCCACATATTTTCTTTATGTACCTG

NNTTCTCAATGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTGGGGAATGCAGACATAGGCTGACGAGGACA
AAACTGTGACGTGATAGAGAAGGCGCCGTGAGAGACAGTCACCACTACCA
TACAGGAATGCAAGCACACAGTGTGACTTTTATGTACAGTGGAGACTATC
TGGAAGCAGAATTAATCGCCTTTAACTGGCTACTCATTACACTAGTTGGT
CTATTATTATTATTGAGTGTGTTGTATCTAAAGACGCAGACACAACTGAA
GCCGGTTAGACATAGATTGCATCTGGTTTGCTCGATACATAAAACACTCT
CCCTCCTCCCGATCCTTCTTTCTCTTCCTGGCAAATGCATGGTGCTCTTT
TTTTTTTCCCAGCCGGAAGATTCTGCACCGCAAGAGCATTCTCAGTTGGT
TTTTTTTTCCCCGCCCCCCCTNTTNTGTTTTCGATTGAAAAAAAAAAAGG
GGAGTTTTNTGGGAATTATTTAGAATGAATNAGTTTTNAGTATTTANATT
TTNNTNAAATAGTTTTGTAAGTTTTGTAAAAATTTATTTTTTGGTTAAGA
TAGNAAAGAAAGATAGGGTTATTAGGGNTGATGTTAATATTTTTGTGTTT
AAAATGGGTTTTAGAGGNTTTAGTTGNTTNTAGTNNTTTGAATGGTGGTT
GAATTTAAATAATAAAAGATTTGTATGTTTTATAAAGAATTTTTGTGTGT
TTGTTTAAGGATTTGGGTTAGGTAGTATGGTATAATATTGATAGATGTGA
AGGAAATTGTTGTATTTTTGTAGAAAGATAATATGTAGAAGATTAATTAT
AATTGGTATGTGGTTTTTATAAAGTTAAAGAATATGTTGATGGATTAGGA
TTTTATTATGTATGGTAATTGTAATGTAAGTGATTGGTTGATTTTTTTTT
TGTAATTTTTTAGGTATTAGTTTGAAATTGATGGNTAGTTTTATTTTATA
GAAGGTTTTTAGGATTTTTAAAGATTTTGTTTTAAGTTTTATTGTTTATT
GTGTTATTTTTTTTGGTTATTTAATAAAATTTTTAGGTGTTTTATTTAGA
AATATAGAATGTTTATATTTTATATTTTTTATATTATAATTATGTTATTT
ATGTTTTTTATTTATTTTTAAATATTTTGTATATTATTATTATTTTTTTA
TGTATTGTATTATTGTTTATATTGATTAGTGATTTTATATTTNATATTAT
AAGATAANTATTATTTTTGTTATAATATAATTGTATTGTATTATATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_a17.g1 MSMg01no217_a17.g1 CHROMAT_FILE:
MSMg01no217_a17.g1 PHD_FILE: MSMg01no217_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:20 2005
         (395 letters)



>mm_chr11_101238191_101238985
          Length = 795

 Score =  646 bits (334), Expect = 0.0
 Identities = 370/382 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctggggaatgcagacataggctgacgaggacaaaactgtgacgtgatagagaaggcgcc 61
           ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  
Sbjct: 583 tctggggaatgcagacataggctgaggaggagaaaactgtgacgtgatagagaaggtggt 524

                                                                       
Query: 62  gtgagagacagtcaccactaccatacaggaatgcaagcacacagtgtgacttttatgtac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 523 gtgagagacagtcaccactaccatacaggaatgcaagcacacagtgtgatttttatgtac 464

                                                                       
Query: 122 agtggagactatctggaagcagaattaatcgcctttaactggctactcattacactagtt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtggagactatctggaagcagaattaatcgcctttaactggctactcattacactagtt 404

                                                                       
Query: 182 ggtctattattattattgagtgtgttgtatctaaagacgcagacacaactgaagccggtt 241
           ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 403 ggtctattattattattgagtgtgtcgtatctaaaaacacagacacaactgaagccggtt 344

                                                                       
Query: 242 agacatagattgcatctggtttgctcgatacataaaacactctccctcctcccgatcctt 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 343 agacatagattgcatctggtttgctcgatacataaaacactctccctcctcctgatcctt 284

                                                                       
Query: 302 ctttctcttcctggcaaatgcatggtgctcttttttttttcccagccggaagattctgca 361
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 283 ctttctcttcctggcaaatgcatggtgctcttttccttttcccagccggaagattctgca 224

                                 
Query: 362 ccgcaagagcattctcagttgg 383
           ||||||||||||||||||||||
Sbjct: 223 ccgcaagagcattctcagttgg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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