BAC Information

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BAC

Clone NameMSMg01-217I15
Chromosome11 (Build37)
Map Location 29,268,022 - 29,268,408
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637
Downstream geneLOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217I15.T7 (MSMg01no217_i15.b1)MSMg01-217I15.TJ (MSMg01no217_i15.g1)
ACCAG397036AG397037
length1,2811,281
length of high quality
(start - end)
373 (468 - 840)386 (71 - 456)
definitionCHROMAT_FILE: MSMg01no217_i15.b1 PHD_FILE: MSMg01no217_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:09 2005CHROMAT_FILE: MSMg01no217_i15.g1 PHD_FILE: MSMg01no217_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGCATTGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAATTTTGCGTTTTTAGAAAATTGTTGGGTAATGCTGTTGGTATGTGAAC
TATATTTGAGAGTATCTGGCTTAGCGCAAGATCCAAACATTATTTTGTTG
GGGAAAAATATGTACAGGTGTTGTGGTTTGAGTAGAAATGACCCCCATAG
ACTATATATTTGAATGCTTGGCCCATAGGGAGTGGCACTACTAGGAGATG
TGGCCTTGTTGGAGGAAGTGTGTCACTGGGTGGCTTTGAGGTCTCAGAAA
CTCAAGCTGGGCTCAATAGCTCACAGTCCTTCCTACTATCTGAGGATCAA
GATGTAGAACTCTCAGCTCCATCTCCAGTACTATGTGTGTCTACATGCCA
CCATTTCCTGCCATGAAGATAATGGACTTACCCTCTGAACTATAAGCCAG
CTTTTTTTCCCCCCCCCTCTTTATAAGAGTTGTCGTTCTGAAAAAAGCCA
TCTTCAGCTCCAGACAGCCGGCCACCTTCCTGGTGAGAGCACGGGGGTCT
GCCTGGCCTGAGAGGTTTGTGGCACAGGCGCCGGCGGGAGCCTTCTTGGC
TCCGGGACTCCGCGGAGGGCAGGCTGCACGGGTGACCGTGTGGAATACAG
AGTGCCAGCCGTTTCTGGGACGGGCGAGAGAGTCGCAGAGATTCTGGGGC
GGCACCATCCTCAGCTCCAGACAACCAGCCACCTTCCCGGCAAGAGCCAC
AGAGCTTCTGAGGCTGCGACATCTTCGACTCCAGACAACTGGCCACCTTC
CTGGCCAAAGCAACACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCAC
CTTCAGCCAGGAGGAGGTCCAAACACCAGATATCTGTACACCTTCCCTGA
GAGAGGAGAGCTTGCCTACAGAGACTGCTCTGACCACTGAAACTCAAAGA
AGAGAGCTTGTCTCCCACCCCTGCTGATAGAGGGTAACAAAATCTACAGA
AGAACAATCTTTTTAACAAGACCACTATTACACCTTATTCCCGAAATTGC
CCAATGGTGAAGGGTAACCGTAAAATCCTCCTAACAAAAGCTCGGACCAT
TCTCCTTTTCTGAAACCTGAAAGCCCCTTTTCCCATTCTGGAAACCTTTA
AACCTGAAAAGAGAACCGGATTTTAAAACATTTCTCCGATGGTGTGGGGA
CAATAAAAAGGTTTCCCCTCCCTTCTTAAAATCGCAAAACCGTTTAGAGT
TTCCCCTTTTAAAAAAAGAAAACTGTTCATG
NNNTTAATCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGTGAGGCTTGACTGCAAGTGCCATTAT
CTTCTAATCCACCTAACAAGTCCTAGGTTCCACTGTTCTTAAGAGCAGAA
TAAACTGGCAGCCAGCCCTCTAGCACATGGGCCTTTGGAGGTATTTAAGG
TCTGCATCGTAACAACCTCTTAGCACAGCGACTTCTTGTATCTAGCTGAT
GACCTTGAGGATAAATTAGCTAGAGATTACTGCTTACAAGTAAATTTAGA
GAACCAAATGATTTGCCCCAGAACACCGAATTTATTTTAAAAAAATCCCT
CAAGAAAGTCTTACTCAAGTCTCTGCAATTTTTTTCTAAATAGCACTTAG
ATGTATACATAAGCATCATGTAATCTTTGAAGTAACTGACAATATCTCCA
TCTATTTTTTTACCCCCCCCCCTTTATTATTTCTAATTTTCAAAAAGAAG
GTGTAGAATACTAGGAACACACATATGATTAAAACAGCTTAAATAATATT
TTTCTTTTTAATATTTTTGCATTTAATGAATGTGTGTGTGTACCTGAATG
TATGTCTGTGTACTGTGTGCATGTAGTGCCCAAGGGGGTAAAAAGTGCAT
CCAATCCTCTGGAACTGGAGTTGCAGGCAGTTGTAAGCTTCCCAACAGGA
ACACTGGAAAACAAACTCAGGTCCTCTGCAAGAGCAGCAAGCATTCTTAG
CAGCTAAGCCATCTTCCCAGCCCCTTAAAAGAAGGAAGAAAGAGAGAGGA
AGGAAAGAAAGAAGGAGTAAAGGGAGGGAGGGAAAGAACAAGGAAGGAAG
GGAGGGATGAAAGAGAGGAGAGGTAAAGGTAGGAAAGGTAGTATTTTTTT
TTTTTATTTTTTTTCTTTTTTTTTTTATTTTAATTTCAATTATTTTATAT
TATTTCTTTTTTTTTTTTTTCTATATTTCGCCTCTTTCTTCCTCACTCCC
TTTTTAACTTCTTCTTTCTTTTCTCTTTCTTTTTTTATACTTCTTTTTTC
CTTTTTTTCTCTTATATTTTCTTTCTTTTCTTTTTTCTTATTTCTCTCTT
TTACTATTTATTTTTTAATTTGTCTCTACTTTCTTTCTTTTTTCTCCTTT
CTTATTCTCTTATTCATTCTCTTTCTTTTCTTATCTTTTCTCTATACCTT
TATCTCCTTCTTAATTTATATATATCCTATCCTTTATATTTTATTATTTT
ATTTATTATTCTATAATCTTCTTCTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_i15.g1 MSMg01no217_i15.g1 CHROMAT_FILE:
MSMg01no217_i15.g1 PHD_FILE: MSMg01no217_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:09 2005
         (386 letters)



>mm_chr11_29267822_29268608
          Length = 787

 Score =  702 bits (363), Expect = 0.0
 Identities = 381/389 (97%), Gaps = 5/389 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgaggcttgactgcaagtgccattatcttctaatccacctaacaagtcctaggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aatgtgaggcttgactgcaagtgccattatcttctaatccacctaacaagtcctaggttc 528

                                                                       
Query: 61  cactgttcttaagagcagaataaactggcagccagccctctagcacatgggcctttggag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cactggtcttaagagcagaataaactggcagccagccctctagcacatgggcctttggag 468

                                                                       
Query: 121 gtatttaaggtctgcatcgtaacaacctcttagcacagcgacttcttgtatctagctgat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 467 gtatttaaggtctgcatcgtaacaacctcttagcacagcaacttcttgtatctagctgat 408

                                                                       
Query: 181 gaccttgaggataaattagctagagattactgcttacaagtaaatttagagaaccaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaccttgaggataaattagctagagattactgcttacaagtaaatttagagaaccaaatg 348

                                                                       
Query: 241 atttgccccagaacaccgaatttattttaaaaaaa---tccctcaagaaagtcttactca 297
           ||||||||||| ||||||||||||||  |||||||   ||||||||||||||||||||||
Sbjct: 347 atttgccccaggacaccgaatttatt--aaaaaaaaaatccctcaagaaagtcttactca 290

                                                                       
Query: 298 agtctctgcaatttttttctaaatagcacttagatgtatacataagcatcatgtaatctt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtctctgcaatttttttctaaatagcacttagatgtatacataagcatcatgtaatctt 230

                                        
Query: 358 tgaagtaactgacaatatctccatctatt 386
           |||||||||||||||||||||||||||||
Sbjct: 229 tgaagtaactgacaatatctccatctatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space:   293306
Effective search space used:   293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)