BAC Information

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BAC

Clone NameMSMg01-218H09
Chromosome11 (Build37)
Map Location 117,350,393 - 117,373,869
singlet/doubletdoublet
Overlap genenone
Upstream genePrpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218H09.T7 (MSMg01no218_h09.b1)MSMg01-218H09.TJ (MSMg01no218_h09.g1)
ACCAG397624AG397625
length723723
length of high quality
(start - end)		314 (43 - 356)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no218_h09.b1 PHD_FILE: MSMg01no218_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:29 2005CHROMAT_FILE: MSMg01no218_h09.g1 PHD_FILE: MSMg01no218_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,350,393 - 117,350,703)(117,373,582 - 117,373,869)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCCTCTCCATAAGCCTCAGAACCTTCCCCAGCCCTGGCTCCCTCTAC
TGCCCTGGCTTTGCTCAGAATGGTCTCTTGGCACCTTCCTCTCTAATTCC
ATCTATGCTTTGCTCCACCCATGTGTGGTGCTTCCTCCACCACTTGTGGG
TCCCCACTAGTTCTCCCTTTGGCTAATTCCTGCCCACTTCCCCTCAACCT
TATTTAGATGGATCACAGATGAGAATGTCCCATGCACCATAAAAGGCTGT
TTCCTCATGCTACTACTCCAAGAGTCTTCTGACTTCCCCAAAGCACATTT
GCAAAGCATTGTATGTTATACCTCACCCCATGGTCTTTTAGCCCACTCCT
CTATCTGTGTCACGCGCGGGTGACCACAAATGCTAGTTGGTAAGGTGAAC
CTTCCTCCACACCCTGAGCTCTTGACTTACGACTTCATTGTAGTGCTTAT
CATATGTGCTGTATATGACCACACACCAAACATGATGCAAAGCCTTCTAG
TATGCACCATGCATAGTGTTTAATGCTTTAATACCCAACAGGGTTAGTAG
CCAGTGTTTAGTGAATGAATGGATGAGCACATAGTCAGAGAGACTGTCTC
TTGTGATGCTCACAGGAATGACATCATCACACATATTCATGGAAGTGACA
TCATCACAGATGTTCATGGGAAT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATGTGTGAAGAAGACAGAGGCAGAGGT
CACGACACTGGCTCCTTTTCATGAAAGGCCAGGGAGGTCTTCCCAATTTG
TGACACCTGAGGCCATCTGGGCAACACATCCTCTGTGACCAGAAACGCAG
GGGCCTCATGCTCACCAGGAACACGCTTCAATCTAGAGTTGGGCCTGCTT
GTGATTCTCGAATGCAGGAGGCTGAAGCAGGAGGACTGGCCATTCCAGGC
TACCCTGGACAAAACCAAGAAAGGAAAACATTGCATCAATCCAGAGAGAC
AGGGGCTGCTCTTGGGCTCACGCACCTCACATAGCACTTGACTTCTGCAG
ATTTTACACCAAAGCTCATGACACGTGAAGGTTAGCATTCAAGTTTTGGA
ATTAATCAGCCCAGCAAAGGGCAGCTGACCCTATCCGTGAGCTGGCTTCT
GCAGACAGGAGATAGTTGGCTCAAACCTTTGGGATCTAGAGCTGTGCTGG
GCTTGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG
TCTCCTGAGGGAACGCTACCATGGGGCAATTCGATTCTTCATTTTCTTGG
ACAGCCTTTGATCCTTTGAGCTTGCTGGGCACAGTTCCTTTCATTCGCAG
GCTCTGAAGATGAGAGAATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_h09.b1 MSMg01no218_h09.b1 CHROMAT_FILE:
MSMg01no218_h09.b1 PHD_FILE: MSMg01no218_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:29 2005
         (314 letters)



>mm_chr11_117350190_117350903
          Length = 714

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccctctccataagcctcagaaccttccccagccctggctccctctactgccc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattctccctctccttaagcctcagaaccttccccagccctggctccctctgctgccc 263

                                                                       
Query: 64  tggctttgctcagaatggtctcttggcaccttcctctctaattccatctatgctttgctc 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 tggctttgctcagaatggtctcttggcaccttcctctctaattccatccatgctttgctc 323

                                                                       
Query: 124 cacccatgtgtggtgcttcctccaccacttgtgggtccccactagttctccctttggcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacccatgtgtggtgcttcctccaccacttgtgggtccccactagttctccctttggcta 383

                                                                       
Query: 184 attcctgcccacttcccctcaaccttatttagatggatcacagatgagaatgtcccatgc 243
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 actcctgcccacttcccctcaaccttatttggatggatcacagatgagaatgtcccatgc 443

                                                                       
Query: 244 accataaaaggctgtttcctcatgctactactccaagagtcttctgacttccccaaagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accataaaaggctgtttcctcatgctactactccaagagtcttctgacttccccaaagca 503

                      
Query: 304 catttgcaaag 314
           |||||||||||
Sbjct: 504 catttgcaaag 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no218_h09.g1 MSMg01no218_h09.g1 CHROMAT_FILE:
MSMg01no218_h09.g1 PHD_FILE: MSMg01no218_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:29 2005
         (290 letters)



>mm_chr11_117373496_117374185
          Length = 690

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtgtgaagaagacagaggcagaggtcacgacactggctccttttcatgaaaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 374 agatgtgtgaagaagacagaggcagaggtcacgacactggctctttttcatgaaaggcca 315

                                                                       
Query: 61  gggaggtcttcccaatttgtgacacctgaggccatctgggcaacacatcctctgtgacca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 314 gggaggtcttcccaatttgtgacacttgaggccatctgggcaacacatcctctgtgacca 255

                                                                       
Query: 121 gaaacgcaggggcctcatgctcaccaggaacacgcttcaatctagagttgggcctgcttg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 254 gaaacgcaggggcctcatgctcaccaggaaaacgcttcaatctagagttgggcctgcttg 195

                                                                       
Query: 181 tgattctcgaatgcaggaggctgaagcaggaggactggccattccaggctaccctggaca 240
           ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 194 tgattttcgcatgcaggaggctgaagcaggaggactgaccattccaggctaccctggaca 135

                                                           
Query: 241 aaaccaagaaaggaaaacattgcatcaatccagagagacaggggctgc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aaaccaagaaaggaaaacattgcatcaatccagagagacaggggctgc 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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