BAC Information

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BAC

Clone NameMSMg01-231D06
Chromosome11 (Build37)
Map Location 29,444,707 - 29,508,928
singlet/doubletdoublet
Overlap geneMtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990
Downstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231D06.T7 (MSMg01no231_d06.b1)MSMg01-231D06.TJ (MSMg01no231_d06.g1)
ACCAG398096AG398097
length714718
length of high quality
(start - end)		325 (46 - 370)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no231_d06.b1 PHD_FILE: MSMg01no231_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:26 2005CHROMAT_FILE: MSMg01no231_d06.g1 PHD_FILE: MSMg01no231_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,508,608 - 29,508,928)(29,444,707 - 29,444,995)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATAAATGAATCAACAACATGTCTTCTTCACAGAGGCAATGGA
CTCAGGACATGGAGGCAGTGTGGCATTAGCCTAGACCCAGCTGAGAAGGG
AGCCCCTTCATGACAGGCAAGGGCTCCTGAACTGTTCTACCAGGAGAGAG
CTCTTGGCTCCTTTGATTCTTTCTCAGAATCGAACATTCTAAGAGAATTT
AATAAAAATTGCCATGCATGTGTGCCTTTTTCCTTCCGAAGCCTGGCTTT
CTCAGCTTCTGGCTGGCAGTTGGTAAAGTACAAAGTCTCCATTGATAAAT
GAATCCCTGATGATCACCAGGGCTGTCCTCCACAGTGGTGACCAGATCCC
TATGTCTCTTCATCACCAAGCGCCAAAGGATTTGTTTTCCACCAGCCACA
GTAGATGTGCTTCAAAGTACAACCTGACATGAACTCCTTGGTGACAAGCT
TATGCTGCTGCCATGATACCCTACATGGCTGCTGAATGTCCCTGCTCCCT
AGGCAAACCCAGCCTGCAGCTCCCAAGGCAAAAAGGGCAAAAATCCAATA
TAACTTGAGATAACAAGTGGGGGTGTGGGGACTCTCACTTCAGTCAATGC
CTAGCACCCTATGACAGGCATCCCATTTCTTCTATAGCTCCTGTTGTCCT
TAGAGAGAAGAGGN

ACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGAAGGGTAGAAATGGAGCACA
GCAGGTAAAGACATTTGCCTCATAAGCCCTACAGCTTGTGTTTAATATCC
CATGAAGGTAGTAACCAAATTGTCCTGACCTCTACAACTACCATGGAACA
TGGATCTTACACAATATATACAACTTTAGTAGGTAACTTGCTATTTGTTG
AATATACTCAGCATGACTTTTTTCTTTTAAGGATCATTAACCTCTCTGAA
ACACCATAAAGATGACATTTCAGTTATAAAAACTGGTATGGACTGTGGTC
TTAGTTTAGATGAATATTTTTTCTAATTCACCCCGCCCAGATCAAGTCAT
TTGTTATGAAGAAAATAAAGTTCCAACTAAGACTTCAAGAGATCCAGGAT
TTTAAAAGCACATTAAAAATGGTAAATGGGAAGCCGGGTGTGGTGGTGCA
CGCCTTTAATCCCAGCACTTGGGTGGCAGAGGCAGGCGGATTTCTGAGTT
TGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATAC
AGAAAAATCCTGTCTCAAAGGTAAATGGGCTGGAGAGATGGCTCACTGAC
TGCTCTTCTGGAGGTCCTGAGTTCAAATCCCAGCCACCACATGGTGGCTC
ACAACCATCCGTAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_d06.b1 MSMg01no231_d06.b1 CHROMAT_FILE:
MSMg01no231_d06.b1 PHD_FILE: MSMg01no231_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:26 2005
         (325 letters)



>mm_chr11_29508404_29509128
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgataaatgaatcaacaacatgtcttcttcacagaggcaatggactcaggaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcctgataaatgaatcaacaacatgtcttcttcacagaggcaatggactcaggaca 466

                                                                       
Query: 65  tggaggcagtgtggcattagcctagacccagctgagaagggagccccttcatgacaggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tggaggcagtgtggcattagcctagacccagctgagaagggagccccttcatgacaggca 406

                                                                       
Query: 125 agggctcctgaactgttctaccaggagagagctcttggctcctttgattctttctcagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agggctcctgaactgttctaccaggagagagctcttggctcctttgattctttctcagaa 346

                                                                       
Query: 185 tcgaacattctaagagaatttaataaaaattgccatgcatgtgtgcctttttccttccga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcgaacattctaagagaatttaataaaaattgccatgcatgtgtgcctttttccttccga 286

                                                                       
Query: 245 agcctggctttctcagcttctggctggcagttggtaaagtacaaagtctccattgataaa 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 285 agcctggctttctcagcttctggctggaagttggtaaagtacaaagtctccattgataaa 226

                                
Query: 305 tgaatccctgatgatcaccag 325
           |||||||||||||||||||||
Sbjct: 225 tgaatccctgatgatcaccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_d06.g1 MSMg01no231_d06.g1 CHROMAT_FILE:
MSMg01no231_d06.g1 PHD_FILE: MSMg01no231_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:26 2005
         (290 letters)



>mm_chr11_29444507_29445196
          Length = 690

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggaagggtagaaatggagcacagcaggtaaagacatttgcctcataagccctacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaagggtagaaatggagcacagcaggtaaagacatttgcctcataagccctacagc 260

                                                                       
Query: 61  ttgtgtttaatatcccatgaaggtagtaaccaaattgtcctgacctctacaactaccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgtttaatatcccatgaaggtagtaaccaaattgtcctgacctctacaactaccatg 320

                                                                       
Query: 121 gaacatggatcttacacaatatatacaactttagtaggtaacttgctatttgttgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacatggatcttacacaatatatacaactttagtaggtaacttgctatttgttgaatat 380

                                                                       
Query: 181 actcagcatgacttttttcttttaaggatcattaacctctctgaaacaccataaagatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcagcatgacttttttcttttaaggatcattaacctctctgaaacaccataaagatga 440

                                                            
Query: 241 catttcagttataaaaactggtatggactgtggtcttagtttagatgaa 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttcagttataaaaactggtatggactgtggtcttagtttagatgaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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