BAC Information

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BAC

Clone NameMSMg01-231J05
Chromosome11 (Build37)
Map Location 84,294,988 - 84,295,263
singlet/doubletsinglet
Overlap geneAatf
Upstream geneTaf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671
Downstream geneLhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J05.T7 (MSMg01no231_j05.b1)MSMg01-231J05.TJ (MSMg01no231_j05.g1)
ACCAG398350AG398351
length826831
length of high quality
(start - end)
276 (193 - 468)230 (185 - 414)
definitionCHROMAT_FILE: MSMg01no231_j05.b1 PHD_FILE: MSMg01no231_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:54 2005CHROMAT_FILE: MSMg01no231_j05.g1 PHD_FILE: MSMg01no231_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTCTTCCTCGTCTCTCCTTTCCTCCTTTTCCCTCAANCCCCCCCTTA
TCTCTTNTTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCAAGCAGTTCCTCTATTATGAAATGAAAAAT
GCCGGCCATACAGTTGATTAAAGTTGAAGACAGTTGAACCGGTGTTTTTT
AAGATTGTGGGAGAATTAAAGGCATATTTTAATAGATGTTGACAAGAAGT
GAACTAACAAAAGCAAAGCAAAGGATTTGCTTGAAAAGATTTAATCAAAC
GTCTTTCTTGGGGGATTAATTGCTGGGGATGACTAGTGCAAGTGGCAGGC
TTGTGTGGATTTGAATGAAAAGTATTGTTCTCGGCCGGTCTCTCTTGTGT
CATTTTGACCTGTACTTTAGCTCTAGTTTTGTAGTTACTTTTGATGGAGA
AAAAAAGAGACACTCTTACAATCTGCACATTCCAGCCCACCCCGTCCATC
TGGGATGATGAGGGAGAGCTTGTGTGTACTTGGATGTAAATAATTTTGTG
TTTGCATACTTATTTACACTAACCATGTTTACCTTTATCAACCTGGTACG
GTTAGCTCCCTTTTATTTTATTCACTTCTTACACTTTGTCATTTCCTTCT
CCTTTTCGCTGCTCAAAATTTTACCTTGTCTAGTCCTACTTACCTTAATT
TACCAAATCTATTCCCGATTTGTATTTCTTATGCCCCTACGAATTTTTAC
TTATATTATTGCGCCTTATTCTTACGCTTGTCCCCACCCGCCATAATTTA
TTCCTCGGCCTCTCCATTGTATTCTC
CCTCTCTTCTCTTCCCTAAACCCTTTTTTTCTTTCTTCCTTCCNNCCNCC
NNCCTACAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTGAAACTACTTAAC
ATACTTATATCAGTATTTAAGTACCATTACCCCATTTATAGTGCGCTATA
ATCTTATTTATTTATTCATTTATTGTGTGTGAGAGAGAGAAAGAGACAGA
GAGACAGAGACAGACTATATGTGTGTTTATGTGTACTTTGGCACACAGTG
GAGAATAGATTCCAACTTGAGGGAATCCATTCTCTCCTTCAATCCATTCA
TGCGGGTTCCAGGTCTGAAACTCCCCTTAGCTGTTTTTGTGTCAGGTGCC
TTTACCTATTGAGCCTCTTGTTTTTTCCTCCCGCCCCCCCTTTAAATCAT
AAAATACTTTAGACAATATAGAACAAGCCCCCAAATGAATAAATAAATCC
TCCATCACCTACCAACCACTAAGATCCTACTATTGTGACTGTACTTCTCA
CATCAAGACTATATATTTTCTAAAGTTTTAATTTGCAGTATCTACATACA
ATTACCATCACTCGCCTCCTATCACTCTTGTTAGGCCACAGCCCGGTACT
ACTTTCATATTTGCAGCTCTAGGTATATTCCAGGCTCTATGTTAAAAAAG
ACTCTTCTTCACGTACTATAACATTCCCTCTGGTACTCACGCCGCATTAT
GCACATTATTTTACACAAGAATACGTTATTCGGCATATTGTTAAAAATTC
ACCCCGTCCCTGTATTTATATTTTCTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j05.b1 MSMg01no231_j05.b1 CHROMAT_FILE:
MSMg01no231_j05.b1 PHD_FILE: MSMg01no231_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:54 2005
         (276 letters)



>mm_chr11_84294788_84295463
          Length = 676

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttttaagattgtgggagaattaaaggcatattttaatagatgttgacaagaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgttttttaagattgtgggagaattaaaggcatattttaatagatgttgacaagaagtga 417

                                                                       
Query: 61  actaacaaaagcaaagcaaaggatttgcttgaaaagatttaatcaaacgtctttcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actaacaaaagcaaagcaaaggatttgcttgaaaagatttaatcaaacgtctttcttggg 357

                                                                       
Query: 121 ggattaattgctggggatgactagtgcaagtggcaggcttgtgtggatttgaatgaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggattaattgctggggatgactagtgcaagtggcaggcttgtgtggatttgaatgaaaag 297

                                                                       
Query: 181 tattgttctcggccggtctctcttgtgtcattttgacctgtactttagctctagttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 296 tattgttctcggccggtctctcttgtgtcattttgacctgtactttagctctagttttgg 237

                                               
Query: 241 agttacttttgatggagaaaaaaagagacactctta 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 agttacttttgatggagaaaaaaagagacactctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)