Query= MSMg01no231_o02.b1 MSMg01no231_o02.b1 CHROMAT_FILE:
MSMg01no231_o02.b1 PHD_FILE: MSMg01no231_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:15 2005
(698 letters)
>mm_chr11_92962118_92963218
Length = 1101
Score = 1295 bits (670), Expect = 0.0
Identities = 690/698 (98%), Gaps = 5/698 (0%)
Strand = Plus / Minus
Query: 5 gaattcct-actgtgtgtaaaagggaatgacctcagacttctcttgtctactatatggac 63
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gaatt-ctcactgtgtgtaaaagggaatgacctcagacttctcttgtctactatatggac 851
Query: 64 ataactctctaaagtattacaatggcatgtgttttagtagggtggccaagctccaaacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ataactctctaaagtattacaatggcatgtgttttagtagggtggccaagctccaaacat 791
Query: 124 gatttcacataaacagagtcccattctgtctttggaggagattgaaattaaacagcagta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gatttcacataaacagagtcccattctgtctttggaggagattgaaattaaacagcagta 731
Query: 184 tctagaactgggtccaaagtaaagaaaagacagaagggggtcttaatagccagactcaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tctagaactgggtccaaagtaaagaaaagacagaagggggtcttaatagccagactcaga 671
Query: 244 tctgatttaggaggtggggactggcaaaactaaaggaggaggcatgaaacctgtcctact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctgatttaggaggtggggactggcaaaactaaaggaggaggcatgaaacctgtcctact 611
Query: 304 ccaaagctgcccaagcatatctgctcaaaaaggcagggctcctgctcatctacctatgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ccaaagctgcccaagcatatctgctcaaaaaggcagggctcctgctcatctacctatgga 551
Query: 364 gacttcatgggaagttggctcagtccctaattctgcagagggaatgcaggcagaagagag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gacttcatgggaagttggctcagtccctaattctgcagagggaatgcaggcagaagagag 491
Query: 424 aactgcaaatgggctacaccctgagcgcttaaatggcaggtgcaagggaatgggtgctgg 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 490 aactgcaaatgggctacaccctgagcgcttaaatggcaggtgcaagggagtgggtgctgg 431
Query: 484 tcgatgggaggagccaaaggactggggaatgtctacatagttccctccaagcctatattc 543
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 430 tcgatgggaggagccaaaggactgggaaatgtctacatagttccctccaagcctatattc 371
Query: 544 ctgcaccaagaaagatacatcttggaaatgacagttcctcccaacacaggatactaagat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgcaccaagaaagatacatcttggaaatgacagttcctcccaacacaggatactaagat 311
Query: 604 acaggcaggcacaaaccctgccttagtcacctcaacacccaccct---gggggggggggg 660
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 acaggcaagcacaaaccctgccttagtcacctcaacacccaccctggggggggggggggg 251
Query: 661 agccacaagctggcacaagtagcctgtgatcagcaact 698
||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agccacaagctggcacaagtagcctgtgatcagcaact 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1101
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1091
Effective search space: 750608
Effective search space used: 750608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_o02.g1 MSMg01no231_o02.g1 CHROMAT_FILE:
MSMg01no231_o02.g1 PHD_FILE: MSMg01no231_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:15 2005
(545 letters)
>mm_chr11_92866161_92867105
Length = 945
Score = 953 bits (493), Expect = 0.0
Identities = 541/575 (94%), Gaps = 30/575 (5%)
Strand = Plus / Plus
Query: 1 tcacctagaactcctatgggaccttatcatttcatgtggttaacactttccacataacca 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 tcacctagaactcctatgggaccttatcatttcatgtggttaacactttagacataacca 230
Query: 61 tggtgatactgaaaagggatggcctcttttaaactttgtgaacaatcatttaaagtctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tggtgatactgaaaagggatggcctcttttaaactttgtgaacaatcatttaaagtctta 290
Query: 121 tatgactgtaactccctttgaattcattagctttgtattctttttgagtaagaaaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatgactgtaactccctttgaattcattagctttgtattctttttgagtaagaaaaaaac 350
Query: 181 aata--tatatatatatatatat----------------------ttatatttatatata 216
|||| ||||||||||||||||| |||||||||||||||
Sbjct: 351 aatacatatatatatatatatatacatatatacatatatatatatttatatttatatata 410
Query: 217 tatatgtatgtatgtatgtatacacacacacacacacacacacacaca------tttatt 270
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 tatatgtatgtatatatgtatacacacacacacacacacacacacacacacacatttatt 470
Query: 271 accaaacactaaggtttattaacaatccttcaaagtctattgtataatatcatggccaga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 accaaacactaaggtttattaacaatccttcaaagtctattgtataatatcatggccaga 530
Query: 331 aatgattcactaatataagatgctactataaatgttctatagggaagaaatttaaaattt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatgattcactaatataagatgctactataaatgttctatagggaagaaatttaaaattt 590
Query: 391 gccaaatttaagttcaagtatttccctatataacaaataaatatacacatgacacatagt 450
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 591 gccaaatttaagttcaagtatttccctatgtaacaaataaatatacacatgacacatagt 650
Query: 451 ccttctttcatctcactgatattgtcatatagatattactctaaatttagagtattgcct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccttctttcatctcactgatattgtcatatagatattactctaaatttagagtattgcct 710
Query: 511 ttgtaaaatctctctgactttaaagaggccatatt 545
|||||||||||||||||||||||||||||||||||
Sbjct: 711 ttgtaaaatctctctgactttaaagaggccatatt 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
