BAC Information

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BAC

Clone NameMSMg01-232K23
Chromosome11 (Build37)
Map Location 85,271,532 - 85,271,847
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232K23.T7 (MSMg01no232_k23.b1)MSMg01-232K23.TJ (MSMg01no232_k23.g1)
ACCAG399116AG399117
length756757
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no232_k23.b1 PHD_FILE: MSMg01no232_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:14 2005CHROMAT_FILE: MSMg01no232_k23.g1 PHD_FILE: MSMg01no232_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTTGAAAACAGCTTGAAACTAGATGCTATGCTAATTTCTAAA
CTCCTGACAGCAGTGAAAGTCACGGACCAAGACAGGGGAGAGTGAAAAGT
GCAAATGGAAAACCTTTCCCACAGCACCACCGGTCACTTTTTTAAGTATG
CATAACATTTAGTGATGTGACAGCAGCTTCATAAAAACAGCTACAGCAAC
CAGTGAGAACCACTCAGTTCAAGTGCAGGAGAAAACCTTACACCGTGTAC
AGAAAGACCAGGAAAGCACTCTGCCTTATAAGTAATGGTGCCCACAGGAA
TCACAGGAGGAGGCAGTGTCTAAACCCACGCCTGACAGCATCAAGTCAGC
AAGAGACACAAACGCACAACACACAAAGTAAAAGGATTTGGTACATACTT
GTGACAAAAAATTTTTTTGTGAAAGTACAGCTATCAAAGGCAGCAATTTT
CTCCTGCAAGACTACGACGAGGATCCTAAAAGTAAAGAGGAAAAAACCGG
AAAAGGGACGTGAGTAAACGTGAGATTCTATGAACGGAATCATAAATAAT
TAAATTATACGTTTAAAACAGAACATTTTAATACATAGAATAAAAAAAGC
AAACTCTAAAAATCTCAAAGTAAAAACAATGAAAATTTTCATATAAACAA
AGAAAGTGACAGTTATTCTACAGCTGAAAAGTGCTCTACCAACACTTTCA
TTTTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAATCCACTTGCCGTTTAAAAGA
AAAAAAAAAAAAAGAAAAAGCACTGATCTGATAGCTCAGCAGGGGAGAGT
TTGTTTTGAAATCGAGAAGACCTAAATTCAATTTCTCAGACTTGTAAAAA
GGCCATGCATGGCACCTCCATCTGTAGCCCCAGCACTATAGAAGAGGCAG
AGAGTAGGGGACTGACTGAGCTTGCTTGCCACTGGCCTAGTTCCAGGCTC
CTCAAGGAGAGAGCATGCCTCAGGGGAGTGAGGAGGAGAGTGATAGGGAA
GGACCTCAACTTAGCGATGTTTTCTGCACCCCCCCCGCAGCCCACATCCC
TGTGGAGATACTGCACACATGCACCACACACACACACACACACACACACA
CGCGCGCACACACACACACTCACACAGAGTGCAGCTGCTTAGGTTCAGCT
GAGGCTACCTATAAGTAATTGTTGGTAGAATAGGGAAATCAGGGGGCTGA
AGACTTGGCTCAGTGGTTAAGAGCTCTAAGTGCTCTTCCAGAGGTCCTGG
GCCCTGAGTTCAATTTCCCGCATATATATATAATCTTTTTAACAGAATAA
GGAAATCATAAAACCCGAGTGAGTTTGTGTTGGAAGCACATGGTGTTTGT
AAAGTTCTTATTCTAATTCAAAGAGATCAAAGCGGAAAGATGTAGACAAC
TCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_k23.b1 MSMg01no232_k23.b1 CHROMAT_FILE:
MSMg01no232_k23.b1 PHD_FILE: MSMg01no232_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:14 2005
         (320 letters)



>mm_chr11_85271328_85272047
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtttgaaaacagcttgaaactagatgctatgctaatttctaaactcctgaca 64
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 520 gaattcatgtttgaaaacagcttgaaactagatgctatgctaatttctgagctcctgaca 461

                                                                       
Query: 65  gcagtgaaagtcacggaccaagacaggggagagtgaaaagtgcaaatggaaaacctttcc 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 gcagtgaaagtcacggagcaagacaggggagagtgaaaagtgcaaatggaaaacccttcc 401

                                                                       
Query: 125 cacagcaccaccggtcacttttttaagtatgcataacatttagtgatgtgacagcagctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cacagcaccaccggtcacttttttaagtatgcataacatttagtgatgtgacagcagctt 341

                                                                       
Query: 185 cataaaaacagctacagcaaccagtgagaaccactcagttcaagtgcaggagaaaacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cataaaaacagctacagcaaccagtgagaaccactcagttcaagtgcaggagaaaacctt 281

                                                                       
Query: 245 acaccgtgtacagaaagaccaggaaagcactctgccttataagtaatggtgcccacagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acaccgtgtacagaaagaccaggaaagcactctgccttataagtaatggtgcccacagga 221

                           
Query: 305 atcacaggaggaggca 320
           ||||||||||||||||
Sbjct: 220 atcacaggaggaggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)