BAC Information

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BAC

Clone NameMSMg01-232M08
Chromosome11 (Build37)
Map Location 9,544,667 - 9,544,952
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M08.T7 (MSMg01no232_m08.b1)MSMg01-232M08.TJ (MSMg01no232_m08.g1)
ACCAG399174AG399175
length729738
length of high quality
(start - end)
118 (129 - 246)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no232_m08.b1 PHD_FILE: MSMg01no232_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:20 2005CHROMAT_FILE: MSMg01no232_m08.g1 PHD_FILE: MSMg01no232_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNGAGCCGNGGAA
NNCCACTGTTTCTCAANCCAGAANCCCCAAANCCANACNGGNCCAAACAA
NAGCAGGGNCATTTTTATCTGAAAAGACCCCACTCCGGGNACCAACTTCG
GNATTAGAAATTCACTGCTGTGAAGAGACATCATGACCACAGCAATTCTT
ATGTTATAAAAGACAACATTTAATTGAGGTTTACTTACAGGTTCTCTTTT
TCAGTCAACTATCATTATGGCAGGAAGCATAGCAGCTTCCAAACTAGGTA
TAGCCCCCATTTTTTTTTTTTTGAACAACCACANGGGGGCCAGGGAGNAG
AATGTTTTTCCCCCCCCCGCTTGGCACAGGGAGCAGTACTATTAGAAGGT
ATGCCTTACCCGCAAATATATAAACTTGTTGGAGGAAGTTTGGCACTGTG
TGTGAGGAGCGGACGTGGCAGCAGTCACAAGGTGGCGCCCGGACTGCAGC
TAAGCCTTATGACTTGCACCTGACTTCCTCATACACCTGAAAATAAGCCA
CGACCATCACGAGACCTGCAGAGGCGCACCACGATGCTGGCGGTTTACCC
AAGTCCATAATTGGCGGAGACATGCCCCTGCCGTCCCGAATGTCTGATTT
TTTTTTTTTGGCGAGGTGACGCGTCCTGCTGTGCTCACCATGTCACTGTT
ATTTTACTCATAGCGCTTATCCCGCTTCT
ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTGGGACACCTCTACTCTTTGAAA
TTCAGATTATGAAAAATGTCATCACAAGCTGTCACTTTACCAAAGGGGAA
TGCACTGCTTTTGTTTTTCAATGGGTTTCATTACAAACAAAGCAGACTGA
TGTTGGGGCACAATGAGGATGGAAAATGACATGACTGGGGCCTGTGACAG
CTTAGATGTATGGATATTTTGGCTGGGGACTCAGATTCACCGTGGTTCCT
GTGAATTAACAAATATTTGTTAGCCTCCTTTATCAGAGCTGGTGACATGA
TTCCTACTTTATAAACACACCACCGCGCCTTCAGACACAGGACTGAGCAC
ATGCTATCCTGCCCCCCGCCTCTGAAACTGGTGATCATCATGTTATGAGA
TGCAGCTCACTTCAAATCAGAAAATACCATGGCACATTTGTGCATTGCTG
GAGATTGAGTGGTGAGTGGGACATGAGGTCTATCGTATATGGAGTGGACA
GAACAATGAAAATCAGAAAGTTTCCTTGCATGTGAGCTAGGAGTGGAGAA
AGGCCAGAATGCACATAAATTGCATTATGGAAGGGTTTCTATGAGCAGCT
TTGTGGGCGAGAAGGCATCTAGACAAAATGTGCATCAGAGAGAGGTGTTA
AGACAATACAGCATGAGTCATGTTCTTAATGCCTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m08.g1 MSMg01no232_m08.g1 CHROMAT_FILE:
MSMg01no232_m08.g1 PHD_FILE: MSMg01no232_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:20 2005
         (286 letters)



>mm_chr11_9544467_9545152
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgggacacctctactctttgaaattcagattatgaaaaatgtcatcacaagctgtca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tggtgggacacctctactctttgaaatttagattatgaaaaatgtcatcacaagctgtca 260

                                                                       
Query: 61  ctttaccaaaggggaatgcactgcttttgtttttcaatgggtttcattacaaacaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttaccaaaggggaatgcactgcttttgtttttcaatgggtttcattacaaacaaagca 320

                                                                       
Query: 121 gactgatgttggggcacaatgaggatggaaaatgacatgactggggcctgtgacagctta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gactgatgttggggcacaatgaggatggaaaatgacatgaatggggcctgtgacagctta 380

                                                                       
Query: 181 gatgtatggatattttggctggggactcagattcaccgtggttcctgtgaattaacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtatggatattttggctggggactcagattcaccgtggttcctgtgaattaacaaat 440

                                                         
Query: 241 atttgttagcctcctttatcagagctggtgacatgattcctacttt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgttagcctcctttatcagagctggtgacatgattcctacttt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)