Query= MSMg01no233_a13.b1 MSMg01no233_a13.b1 CHROMAT_FILE:
MSMg01no233_a13.b1 PHD_FILE: MSMg01no233_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(323 letters)
>mm_chr11_111590387_111591109
Length = 723
Score = 447 bits (231), Expect = e-130
Identities = 295/323 (91%), Gaps = 20/323 (6%)
Strand = Plus / Plus
Query: 4 ggaattcagcaatgtcagagagctactggttagaacactttgagcacttaaataatcatt 63
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcagcaatgccagagagctactggttagaacactttgaggacttaaataatcatt 263
Query: 64 tctaaacagccacttcttgctggcttccagagagaaaaagaccatggaatcagttttgtg 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctaaacagccacttattgctggcttccagagagaaaaagaccatggaatcagttttgtg 323
Query: 124 gaatgtctgctaacattgccaaaggtctgccatggttacaggcatgttagctataattca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 gaatgtctgctaacattgccaaaggtctgccatggttacaggcatgttagctaaaattca 383
Query: 184 actttagcgtgtgt--gtgagtgtgtgtgcatgtgtgt-t---tgtgtgtgtgtc-tgtg 236
||||||| |||||| |||||| ||||||||||||||| | |||||||||| | ||||
Sbjct: 384 actttagtgtgtgtatgtgagtatgtgtgcatgtgtgtgtctatgtgtgtgtg-catgtg 442
Query: 237 tgtgtgcatgtgtgtttgtgtctatgtgt----atttgtgtgtgtctatgtgt--gtatg 290
||| | ||||||| |||||||||||| |||| ||||||||||||||| |||||
Sbjct: 443 tgt-t---tgtgtgt--gtgtctatgtgtgtgtatttatgtgtgtctatgtgtatgtatg 496
Query: 291 tgtgtgtgcatgtgtgtttgtgt 313
||||| |||||||||||||||||
Sbjct: 497 tgtgtatgcatgtgtgtttgtgt 519
Score = 87.7 bits (45), Expect = 9e-22
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 195 tgtgtgagtgtgtgtgcatgtgtgtttgtgtgtgtgtctgtgtgtgtgcatgtgtgtttg 254
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||
Sbjct: 647 tgtgtgagtgtgtgtgcatgtgtgtttgtgtgagtgtgtgtgtgtgtg--tgtgtgtgtg 704
Query: 255 tgt 257
|||
Sbjct: 705 tgt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_a13.g1 MSMg01no233_a13.g1 CHROMAT_FILE:
MSMg01no233_a13.g1 PHD_FILE: MSMg01no233_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(640 letters)
>mm_chr11_111762698_111763737
Length = 1040
Score = 1116 bits (577), Expect = 0.0
Identities = 619/633 (97%), Gaps = 2/633 (0%)
Strand = Plus / Minus
Query: 1 aaacccaggtggggcttatttaataagaac-ctaactcaatgaagcaaaagaaaaaaatc 59
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 655 aaacccaggtggggcttatttaataag-actctaactcaatgaagcaaaagaaaaaaatc 597
Query: 60 aatttcttactcaattgattattttcttgcaaagagggtaaggcatgcctctctataggt 119
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 596 aatttcttactcaattgattattttcttgcaaagagtgtaagacatgcctctctatatgt 537
Query: 120 gaagaagagataaaagaatcactgtaaatgtagtccactatgcttttaaccagttaagta 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaagaaaagataaaagaatcactgtaaatgtagtccactatgcttttaaccagttaagta 477
Query: 180 ggaaattcaagaaagccacatctgaccaatagcagagctctgatgagcttttgttggaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaaattcaagaaagccacatctgaccaatagcagagctctgatgagcttttgttggaaa 417
Query: 240 gatgccaactcttctacgaaggaatctcttattcataggtgtcctactcttttctgaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gatgccaactcttctacgaaggaatctcttattcataggtgtcctactcttttctgaaac 357
Query: 300 tctttcctatcttctatttctgacgtgaccccacagctgggtagcagcttatatgccaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tctttcctatcttctatttctgacgtgaccccacagctgggtagcagcttatatgccaag 297
Query: 360 tgagaggctagctaatatcaaataatggttaaatgaataaaggagaaaattatattggga 419
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 296 tgagaggctagctaatatcaaataatggttaaataaataaaggagcaaattatattggga 237
Query: 420 accaatgaggtgcttcttctgtatctctcattaaaaatggctgttccacctatagggttg 479
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atcaatgaggtgcttcttctgcatctctcattaaaaatggctgttccacctatagggttg 177
Query: 480 cagacccctttagctccaacaatatgaactcaccagtaccccccagagctcgtgactcta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cagacccctttagctccaacaatatgaactcaccagtaccccccagagctcgtgactcta 117
Query: 540 gctgcatatgtatctgaagatggcctagtcggccatcagtggaaagagaggcccattggt 599
|||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct: 116 gctgtatatgtatctgaagatggcttagtcggccatcattggaaagagaggccgattggt 57
Query: 600 cttgcaaactttatatgcctcagtacaggggaa 632
|||||||||||||||||||||||||||||||||
Sbjct: 56 cttgcaaactttatatgcctcagtacaggggaa 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
